Best Alignments for T0588

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1qazA/T0588-1qazA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qazA/T0588-1qazA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1332e-182.27e-81 1qazA a.102.3.1
3a0oA/T0588-3a0oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3a0oA/T0588-3a0oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.4932e-145.30e-65
2fuqA/T0588-2fuqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fuqA/T0588-2fuqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.8178e-113.86e-49
3e7jA/T0588-3e7jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3e7jA/T0588-3e7jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9790e-101.04e-46
3ew4A/T0588-3ew4A-t04-global-adpstyle1.a2m 3ew4A/T0588-3ew4A-t04-global-adpstyle1.al 6.8787e-102.91e-50
3evhA/T0588-3evhA-t04-global-adpstyle1.a2m 3evhA/T0588-3evhA-t04-global-adpstyle1.al 1.1024e-092.23e-49
3e80A/T0588-3e80A-t04-local-adpstyle1.a2m 3e80A/T0588-3e80A-t04-local-adpstyle1.al 3.0890e-052.26e-23
2futA/T0588-2futA-t04-local-adpstyle1.a2m 2futA/T0588-2futA-t04-local-adpstyle1.al 3.1300e-052.16e-23
3aflA/T0588-3aflA-t04-local-adpstyle1.a2m 3aflA/T0588-3aflA-t04-local-adpstyle1.al 5.4628e-052.14e-22
1rwhA/T0588-1rwhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rwhA/T0588-1rwhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0738e-031.87e-48 a.102.3.2
b.24.1.1
b.30.5.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001