# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qazA 351 4.17e-20 1qazA a.102.3.1 18848 2fuqA 747 9.99e-11 3a0oA 776 2.83e-10 3e7jA 749 1.18e-09 1rwhA 757 6.52e-05 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 2afaA 425 1.59e-04 a.102.1.3 126668 2zblA 421 1.90e-04 3e6uA 411 1.90e-03 2sqcA 631 1.91e-03 2sqcA a.102.4.2,a.102.4.2 18854,18855 1umpA 631 3.32e-03 a.102.4.2,a.102.4.2 99619,99620 3k11A 445 3.96e-03 1cb8A 678 6.14e-03 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 3gt5A 402 1.66e-02 1kktA 511 2.23e-02 a.102.2.1 68687 1w6kA 732 2.34e-02 a.102.4.2,a.102.4.2 114271,114272 2ri9A 475 3.40e-02 a.102.2.1 152057 3k7xA 349 3.43e-02 1eguA 731 3.81e-02 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1x1iA 752 4.20e-02 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1n7oA 721 4.57e-02 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2g0dA 409 4.84e-02 a.102.6.1 147057 2ahfA 377 5.11e-02 1gxmA 332 5.64e-02 a.102.5.1 76371 1fp3A 402 5.68e-02 1fp3A a.102.1.3 18842 1vd5A 377 5.96e-02 a.102.1.7 108518 2fokA 579 8.67e-02 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1g87A 614 9.64e-02 a.102.1.2,b.2.2.2 83275,83276 1hn0A 1021 1.03e-01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1lf6A 684 1.05e-01 a.102.1.5,b.30.5.5 77918,77919 2gz6A 388 1.29e-01 1fo3A 460 2.35e-01 1dl2A a.102.2.1 18845 1x9dA 538 2.75e-01 a.102.2.1 121810 1ks8A 433 3.07e-01 a.102.1.2 77519 1hcuA 503 5.22e-01 a.102.2.1 65796 2zzrA 397 5.40e-01 3l2fA 390 7.78e-01 3gzkA 537 8.20e-01 1ut9A 609 1.06e+00 a.102.1.2,b.1.18.2 99912,99913 3eu8A 430 1.19e+00 3h7lA 586 1.22e+00 3ez8A 537 1.25e+00 1dl2A 511 1.31e+00 1dl2A a.102.2.1 18844 2q1fA 1022 1.69e+00 1ia6A 441 1.86e+00 a.102.1.2 76738 3hvyA 427 2.16e+00 1hzfA 367 2.53e+00 a.102.4.4 76731 1rdr 461 2.91e+00 1rdr 3i16A 427 3.09e+00 1ovlA 271 3.22e+00 a.123.1.1 87455 1qqfA 277 3.23e+00 1c3d a.102.4.4 18875 1tf4A 605 3.60e+00 1tf4A a.102.1.2,b.2.2.2 18827,22393 1h12A 405 3.86e+00 a.102.1.2 83447 2vsfA 602 4.16e+00 2a73B 991 4.24e+00 1xw2A 405 4.65e+00 a.102.1.2 122389 3dssB 331 4.82e+00 a.102.4.3 157841 2p0vA 489 4.85e+00 a.102.1.8 149142 1wu4A 396 4.88e+00 a.102.1.2 121272 1vl6A 388 4.89e+00 c.2.1.7,c.58.1.3 108724,108725 1btl 263 5.04e+00 1btl 3l2eA 374 5.13e+00 1dceB 331 5.37e+00 1dceB a.102.4.3 18872 3c68A 761 5.53e+00 1ie9A 259 5.55e+00 1db1A a.123.1.1 62318 1xwtA 405 5.55e+00 a.102.1.2 122410 3iukA 562 5.80e+00 1xjjA 644 5.91e+00 1v5dA 386 5.93e+00 a.102.1.2 113537 3d3iA 761 6.53e+00 1n4qB 377 6.71e+00 a.102.4.3 91636 1f60A 458 6.81e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1ermA 263 8.00e+00 1btl e.3.1.1 42690 2fv2A 268 8.26e+00 2q8nA 460 8.64e+00 3g9dA 297 8.80e+00 1l2lA 457 8.90e+00 c.72.1.3 77656 1nc5A 373 9.34e+00 a.102.1.6 85548 2wiyA 394 1.01e+01 3m7rA 253 1.09e+01 2zsjA 352 1.14e+01 1clc 639 1.16e+01 1clc 1clcA 639 1.16e+01 a.102.1.2,b.1.18.2 18835,21872 1nxcA 478 1.22e+01 a.102.2.1 92293 1ajsA 412 1.25e+01 1ajsA c.67.1.1 34276 2qhpA 296 1.30e+01 1yo8A 634 1.42e+01 2jc4A 256 1.44e+01 1m40A 263 1.49e+01 e.3.1.1 74437 1cem 363 1.50e+01 1cem 1epuA 591 1.52e+01 1dn1A e.25.1.1 43358 2gg6A 455 1.57e+01 3mavA 395 1.60e+01 1jxhA 288 1.65e+01 c.72.1.2 67415 2b5eA 504 1.65e+01 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 1v2aA 210 1.66e+01 a.45.1.1,c.47.1.5 100263,100264 3c1jA 424 1.73e+01 2wioA 431 1.75e+01 2aw5A 541 1.75e+01 1kvkA 395 1.79e+01 d.14.1.5,d.58.26.3 73060,73061 3ejbB 404 1.80e+01 3ednA 299 1.82e+01 1ka2A 499 1.85e+01 d.92.1.5 77305 2o9xA 181 1.85e+01 a.184.1.1 148689 3kizA 394 1.90e+01 1px5A 349 1.92e+01 a.160.1.2,d.218.1.6 95277,95278 3f3fC 570 1.96e+01 1ei5A 520 2.04e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1ig0A 319 2.10e+01 1ig0A b.82.6.1,c.100.1.1 62354,62355 1db1A 259 2.12e+01 1db1A a.123.1.1 19329 1c7qA 445 2.12e+01 2pgi c.80.1.2 35307 1u7gA 385 2.13e+01 f.44.1.1 107723 3dskA 495 2.17e+01 3danA 473 2.18e+01 2vebA 195 2.19e+01 2pqcA 445 2.34e+01 2ivnA 330 2.37e+01 3ce6A 494 2.42e+01 2cc1A 262 2.47e+01 e.3.1.1 130211 1iapA 211 2.49e+01 a.91.1.1 62119 3iam4 409 2.51e+01 3h7cX 383 2.56e+01 1vctA 205 2.66e+01 a.7.12.1,d.286.1.1 119986,119987 3k21A 191 2.67e+01 1vrpA 381 2.68e+01 a.83.1.1,d.128.1.2 120473,120474 1t92A 116 2.71e+01 d.24.1.3 112326 3h7kA 383 2.72e+01 2j8sA 1055 2.73e+01 2ga8A 359 2.85e+01 1t0qA 498 2.87e+01 a.25.1.2 106220 2q3uA 383 2.94e+01 d.126.1.6 139809 2ie4A 589 2.96e+01 a.118.1.2 137291 1faeA 629 3.00e+01 1fce a.102.1.2 18837 2q07A 306 3.01e+01 b.122.1.1,c.18.1.4,d.17.6.5 149981,149982,149983 3fgaB 403 3.08e+01 1xknA 355 3.13e+01 d.126.1.6 115414 2nppB 449 3.15e+01 a.118.1.20 138445 2nutA 769 3.15e+01 2gl6A 392 3.16e+01 1vkpA 383 3.17e+01 d.126.1.6 108686 3euvB 427 3.30e+01 1wzzA 334 3.31e+01 a.102.1.2 121536 2ejqA 130 3.31e+01 d.92.1.17 146875 2bb6A 414 3.32e+01 2ga9D 469 3.32e+01 e.69.1.1 145190 1kb9A 431 3.34e+01 d.185.1.1,d.185.1.1 77311,77312 1ci9A 392 3.41e+01 e.3.1.1 64767 2qt3A 403 3.42e+01 2incA 491 3.44e+01 a.25.1.2 137524 3dbaA 180 3.47e+01 3dhyA 495 3.47e+01 3cx5A 431 3.50e+01 d.185.1.1,d.185.1.1 157076,157077 3kd6A 313 3.50e+01 3er9B 479 3.56e+01 2dm9A 198 3.56e+01 d.81.4.1 146544 1t0yA 122 3.60e+01 d.15.1.1 99066 1i1nA 226 3.61e+01 c.66.1.7 71102 1kwfA 363 3.64e+01 a.102.1.2 73078 3kh5A 280 3.65e+01 3dzzA 391 3.66e+01 1g9gA 629 3.68e+01 a.102.1.2 83279 3euaA 329 3.69e+01 1brwA 433 3.71e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 3bujA 397 3.72e+01 2b1eA 564 3.81e+01 1l7aA 318 3.85e+01 c.69.1.25 77772 1rzuA 485 3.87e+01 c.87.1.8 105140 1v02A 565 3.93e+01 c.1.8.4 108194 1ezvA 430 3.94e+01 1be3A d.185.1.1,d.185.1.1 59541,59542 2reuA 258 4.00e+01 1peqA 714 4.02e+01 a.98.1.1,c.7.1.2 104131,104132 2ixsA 323 4.03e+01 1itwA 741 4.15e+01 c.77.1.2 76793 2b4rO 345 4.17e+01 c.2.1.3,d.81.1.1 127845,127846 1l5oA 356 4.20e+01 c.39.1.1 77711 1odtC 318 4.24e+01 c.69.1.25 86885 2z3tA 425 4.31e+01 1pa7A 130 4.31e+01 a.40.1.1 94410 2rdyA 803 4.36e+01 6ldhA 329 4.36e+01 c.2.1.5,d.162.1.1 30161,42128 1cc8A 73 4.38e+01 1cc8A d.58.17.1 39343 1rf6A 427 4.43e+01 d.68.2.2 97366 2f48A 555 4.46e+01 c.89.1.1 132915 2qjzA 123 4.52e+01 a.40.1.1 150835 2zxdA 455 4.68e+01 1b3uA 588 4.68e+01 1b3uA a.118.1.2 19135 3hztA 467 4.72e+01 1lehA 364 4.76e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1dp4A 435 4.88e+01 1dp4A c.93.1.1 35710 2o4uX 334 4.92e+01 1hl9A 449 4.99e+01 b.71.1.3,c.1.8.11 90650,90651 2wtbA 725 5.13e+01 1wndA 495 5.13e+01 c.82.1.1 114751 2p18A 311 5.17e+01 1ub0A 258 5.22e+01 c.72.1.2 88394 1tn6B 437 5.41e+01 a.102.4.3 112528 2gifA 1057 5.45e+01 2okxA 956 5.45e+01 3ii4A 466 5.46e+01 1q8yA 373 5.46e+01 d.144.1.7 96234 3c9pA 123 5.59e+01 3gyyA 341 5.70e+01 1b5qA 472 5.70e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1d0vA 356 5.74e+01 1d0vA c.39.1.1 32476 2h6fB 437 5.76e+01 a.102.4.3 136186 1fezA 256 5.84e+01 1fezA c.108.1.3 43343 2q8zA 342 5.88e+01 c.1.2.3 150133 1qyiA 384 5.94e+01 c.108.1.13 96595 2v8iA 543 5.94e+01 3hfxA 504 6.00e+01 3e5rA 337 6.05e+01 3draB 390 6.06e+01 1qi9A 556 6.11e+01 1qhbA a.111.1.2 19053 1h49A 512 6.19e+01 c.1.8.4 83477 2dt8A 280 6.26e+01 3ddsA 848 6.33e+01 1o0sA 605 6.35e+01 c.2.1.7,c.58.1.3 86540,86541 1hzoA 271 6.38e+01 e.3.1.1 71092 2qasA 157 6.43e+01 1hy0A 466 6.44e+01 1auwA a.127.1.1 61392 1v7cA 351 6.50e+01 c.79.1.1 100446 2vpnA 316 6.51e+01 2pgfA 371 6.58e+01 1yb3A 175 6.66e+01 d.296.1.2 122869 1bsgA 266 6.68e+01 e.3.1.1 42729 2z86A 625 6.69e+01 1gkrA 458 6.69e+01 b.92.1.3,c.1.9.6 70251,70252 1onqA 283 6.77e+01 b.1.1.2,d.19.1.1 93365,93366 3gygA 289 6.78e+01 2og9A 393 6.82e+01 2ihiA 395 6.84e+01 1ec7A 446 6.91e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 3kwkA 175 6.92e+01 2wk9A 389 6.99e+01 2g7sA 194 7.01e+01 a.4.1.9,a.121.1.1 134737,134738 3c46A 1117 7.02e+01 2hqbA 296 7.06e+01 3grfA 328 7.08e+01 2qgyA 391 7.11e+01 3hq2A 501 7.15e+01 3bpwA 342 7.18e+01 2cstA 411 7.29e+01 1ajsA c.67.1.1 34273 2aqwA 332 7.31e+01 c.1.2.3 127184 1vhuA 211 7.46e+01 c.50.1.2 100703 1uc2A 481 7.48e+01 d.261.1.1 99161 1qlpA 394 7.52e+01 1ovaA e.1.1.1 42628 2gdnA 267 7.58e+01 3cg5A 265 7.67e+01 1vsvA 359 7.84e+01 2wk7A 393 7.98e+01 2ixnA 310 8.00e+01 a.268.1.1 137777