# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2drhA	361	1.77e-33		
1b65A	375	3.72e-32	d.154.1.1	42020
1ie7C	570	14.02	b.92.1.1,c.1.9.2	62315,62316
3lmbA	165	18.28		
1t82A	155	26.63	d.38.1.5	106639
3bjuA	521	27.71		
2iw2A	494	33.65		
1w26A	432	37.35	a.223.1.1,d.241.2.1,d.26.1.1	109085,109086,109087
3f6cA	134	39.99		
1uwzA	136	48.74	c.97.1.1	108081
1wn5A	130	49.29	c.97.1.1	121082
2bmjA	178	50.01	c.37.1.8	128797
1qxyA	252	57.14	d.127.1.1	96565
3sil	379	60.47		
2z3hA	130	63.22	c.97.1.1	153998
3lp8A	442	66.02		
2bwvA	440	66.28	c.55.2.1,d.127.1.1	129387,129388
1ywnA	316	67.37	d.144.1.7	124161
3lgfA	125	68.98		
2vzwA	149	70.71		
1jj2A	239	71.82	b.34.5.3,b.40.4.5	63084,63085
2jg1A	330	72.03		
2bgxA	261	77.46	a.20.1.1,d.118.1.1	128504,128505
2ee9A	95	81.98		
1xl3C	92	82.84	a.243.1.1	122104
1rl2A	137	83.75	b.34.5.3,b.40.4.5	24610,25342
1dar	691	85.49		
2gaxA	135	85.66	c.131.1.1	147100
1x45A	98	89.04	b.36.1.1	121679