# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2drhA	361	3.65e-36		
1b65A	375	5.21e-35	d.154.1.1	42020
3lmbA	165	7.421		
1r2zA	274	7.977	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1qxyA	252	12.87	d.127.1.1	96565
3hnoA	419	17.68		
2pajA	492	17.82	b.92.1.4,c.1.9.9	149344,149345
1ie7C	570	18.44	b.92.1.1,c.1.9.2	62315,62316
1yaaA	412	18.80	c.67.1.1	34280
2bwvA	440	21.92	c.55.2.1,d.127.1.1	129387,129388
1ajsA	412	26.91	c.67.1.1	34276
2vzwA	149	29.46		
2oifA	162	29.53		
2iw2A	494	31.57		
2ashA	381	32.67		
1w26A	432	34.48	a.223.1.1,d.241.2.1,d.26.1.1	109085,109086,109087
3hlfA	432	35.77		
2ffyA	358	36.31	e.3.1.1	133394
1t82A	155	37.78	d.38.1.5	106639
2v3zA	440	38.83	c.55.2.1,d.127.1.1	152481,152482
2fgeA	995	40.50	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	133430,133431,133432,133433
2f6hX	419	42.94		
1k3xA	262	43.65	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1zsqA	528	44.63	b.55.1.8,c.45.1.3	125616,125617
2bmjA	178	50.02	c.37.1.8	128797
1vz6A	393	51.39	d.154.1.2	108949
1wl9A	440	54.69	c.55.2.1,d.127.1.1	120998,120999
1l1zA	274	56.54	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
3gpuA	256	56.64		
3l0qA	554	66.68		
1wn1A	356	66.94		
3lp8A	442	67.13		
2jg1A	330	73.22		
2hujA	140	77.25	a.24.26.1	136777
1pvgA	418	77.35	d.14.1.3,d.122.1.2	95161,95162
2j3wA	142	77.51	d.110.4.3	137981
1yqsA	349	77.67	e.3.1.1	123899
1o0xA	262	80.92	d.127.1.1	80755
1wyjA	125	81.51		
1oewA	329	83.14	b.50.1.2	86924
3ezwA	526	83.78		
2qmiA	447	88.38