# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2drhA	361	3.70e-25		
1b65A	375	4.79e-24	d.154.1.1	42020
1vz6A	393	7.233	d.154.1.2	108949
2fk6A	320	8.876	d.157.1.7	133646
2egvA	229	19.24		
1r2zA	274	27.74	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1fmjA	351	29.08	c.37.1.5	59879
1ri5A	298	29.87	c.66.1.34	97502
2zbwA	335	33.66		
2hjgA	436	38.32		
2dexX	671	38.48	b.2.9.1,b.6.1.6,d.126.1.5	131436,131437,131438
1d1qA	161	39.56	c.44.1.1	32642
2d1cA	496	39.99		
3js2A	317	40.30		
3enbA	222	41.86	c.55.3.14	158189
1gkyA	186	43.85	c.37.1.1	31839
1gky	187	44.62		
2a97A	439	44.83		
1jxmA	301	45.71	b.34.2.1,c.37.1.1	67420,67421
1l1zA	274	45.75	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
3kd6A	313	46.84		
3bu3A	306	48.73	d.144.1.7	155590
3gqiA	326	48.83		
2cbnA	306	49.05	d.157.1.7	130191
2dkfA	431	51.22	d.157.1.10	146536
1eejA	216	51.57	c.47.1.9,d.17.3.1	33057,38071
1xwwA	157	52.21		
2pq6A	482	52.67	c.87.1.10	149785
3e4rA	324	54.66		
3a4yA	431	54.96		
1f82A	424	55.94	d.92.1.7	40307
1ex7A	186	56.47	c.37.1.1	59537
3fimB	566	58.39		
3gpuA	256	60.58		
1mkyA	439	61.52	c.37.1.8,c.37.1.8,d.52.5.1	79250,79251,79252
2as0A	396	63.70	b.122.1.9,c.66.1.51	127227,127228
3idoA	178	63.70		
1y44A	320	65.41	d.157.1.7	122608
1s96A	219	66.80	c.37.1.1	98740
2an9A	207	68.52	c.37.1.1	127037
2pvfA	334	68.59		
2ww4A	283	69.34		
1qtrA	317	73.15	c.69.1.7	34660
1p1xA	260	73.28	c.1.10.1	104060
1gsa	316	73.50		
3kvhA	214	75.82		
2wkpA	332	75.88		
1v6zA	228	76.02	b.122.1.2,c.116.1.5	113551,113552
2gq0A	303	77.07		
3fwnA	480	77.55		
3b8xA	390	78.36		
1fmk	452	78.46		
3hjuA	342	78.69		
2pkfA	334	80.09		
1dg9A	157	80.21	c.44.1.1	32637
2zygA	480	80.41		
3kpiA	434	80.81		
3jw8A	320	80.93		
1kdoA	227	81.68	c.37.1.1	68478
3ie2A	431	82.26		
1qz5A	375	86.49	c.55.1.1,c.55.1.1	96614,96615
1wdaA	670	86.60	b.2.9.1,b.6.1.6,d.126.1.5	109243,109244,109245
2c4eA	302	89.16