# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2drhA	361	5.64e-37		
1b65A	375	2.52e-34	d.154.1.1	42020
1bx4A	345	3.875	c.72.1.1	34935
2h5yA	254	19.70		
1gsoA	431	29.85	b.84.2.1,c.30.1.1,d.142.1.2	28240,31647,41492
3lk7A	451	45.25		
1v5xA	203	47.10	c.1.2.4	100377
2r85A	334	47.25	c.30.1.8,d.142.1.9	151676,151677
1liiA	363	49.04	c.72.1.1	73921
1zwyA	185	52.53	c.51.4.3	125753
1hfeL	421	53.96	c.96.1.1,d.58.1.5	36018,39001
1amfA	233	55.56	c.94.1.1	35833
3jrqA	326	60.30		
2izzA	322	62.44		
2kgsA	132	62.69		
2qhpA	296	63.70		
2ksmA	131	65.61		
1rypK	198	69.62	d.153.1.4	41879
2j22A	148	73.98		
2imfA	203	81.49		
2r5fA	264	82.67	c.124.1.8	151590
3f81A	183	85.24		
2dcfA	392	86.93	e.3.1.1	146485