# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2drhA	361	2.74e-41		
1b65A	375	2.88e-38	d.154.1.1	42020
1gsoA	431	3.367	b.84.2.1,c.30.1.1,d.142.1.2	28240,31647,41492
1bx4A	345	4.724	c.72.1.1	34935
2q8kA	401	11.68		
3e4fA	265	16.51		
3bjuA	521	17.69		
2pocA	367	22.03		
3cgvA	397	25.22		
1gnwA	211	31.59	a.45.1.1,c.47.1.5	17727,33021
1a6jA	163	31.94	d.112.1.1	40915
2kgsA	132	32.73		
1v5xA	203	33.04	c.1.2.4	100377
3md7A	293	34.91		
2r85A	334	35.82	c.30.1.8,d.142.1.9	151676,151677
3lk7A	451	38.02		
1hfeL	421	38.39	c.96.1.1,d.58.1.5	36018,39001
1e6bA	221	39.34	a.45.1.1,c.47.1.5	59294,59295
2vgnA	386	51.52	b.38.4.1,c.55.4.2,d.79.3.2	153040,153041,153042
1m4iA	181	53.41	d.108.1.1	74457
1aw9A	216	54.86	a.45.1.1,c.47.1.5	17736,33030
3l09A	266	55.32		
1yslB	402	56.36		
2g0qA	173	57.58		
2c3nA	247	57.96		
2j22A	148	58.00		
1uc8A	280	60.85	c.30.1.6,d.142.1.7	99165,99166
1iuhA	198	61.16	d.61.1.2	83711
1cc8A	73	61.18	d.58.17.1	39343
2ksmA	131	61.44		
3lwbA	373	63.39		
3lp8A	442	64.25		
3e9hA	493	64.51		
1si6X	282	64.66	d.151.1.2	118968
1wycA	392	65.60	e.3.1.1	145838
1udzA	182	66.47	b.51.1.1	99239
3d0oA	317	66.70		
1zwyA	185	67.07	c.51.4.3	125753
1bupA	386	70.72	c.55.1.1,c.55.1.1	33377,33378
2v6kA	214	71.56		
3k5iA	403	71.99		
2ywwA	149	72.33		
2pvpA	367	72.50		
1rypK	198	73.55	d.153.1.4	41879
3mazA	125	77.77		
2wzqA	619	80.41		
2qhpA	296	81.67		
2qezA	455	84.79		
3fzhA	381	87.70