# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2drhA	361	9.08e-31		
1b65A	375	1.18e-28	d.154.1.1	42020
1bx4A	345	11.63	c.72.1.1	34935
2r5fA	264	25.05	c.124.1.8	151590
2r85A	334	27.97	c.30.1.8,d.142.1.9	151676,151677
2kgsA	132	28.81		
2ksmA	131	33.56		
3fzhA	381	33.86		
2izzA	322	35.36		
1gsoA	431	37.60	b.84.2.1,c.30.1.1,d.142.1.2	28240,31647,41492
1v5xA	203	38.49	c.1.2.4	100377
3lk7A	451	41.32		
2h5yA	254	57.31		
3f81A	183	60.03		
1nsjA	205	67.94	c.1.2.4	28560
3g5sA	443	73.26		
3lwbA	373	73.28		
1xbbA	291	73.97	d.144.1.7	115077
1t4hA	290	85.24	d.144.1.7	106420
1zwyA	185	86.14	c.51.4.3	125753
1vk4A	298	90.00	c.72.1.1	100850