# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2drhA	361	7.06e-38		
1b65A	375	1.52e-35	d.154.1.1	42020
1rmgA	422	7.824	b.80.1.3	28029
2p3zA	415	11.01		
3lk41	286	11.82		
1bx4A	345	12.01	c.72.1.1	34935
3d3iA	761	12.19		
2pa6A	427	14.69		
1df0A	700	15.11	a.39.1.8,b.14.1.1,d.3.1.3	17375,23674,37106
2vccA	891	15.52		
2fk6A	320	16.18	d.157.1.7	133646
3iiiA	560	16.34		
3lk7A	451	16.73		
2rdyA	803	17.63		
1j5sA	463	17.78	c.1.9.8	71580
3k4jA	623	19.40		
2ebsA	789	21.04	b.69.13.1,b.69.13.1	146772,146773
3hagA	504	22.59		
2q4wA	524	22.70		
1kdgA	546	25.16	c.3.1.2,d.16.1.1	77337,77338
3ddoA	253	25.49		
2d1cA	496	25.51		
1pc3A	350	25.98	c.94.1.1	104102
3lwbA	373	26.02		
2efjA	384	27.10		
1n1tA	641	30.69	b.29.1.15,b.68.1.1	79821,79822
3bh7B	352	32.54		
3e5rA	337	34.07		
2g3fA	421	35.73	b.92.1.10,c.1.9.17	147073,147074
3hm7A	448	36.37		
3iaeA	570	37.12		
1wuuA	399	37.38	d.14.1.5,d.58.26.7	114900,114901
1ctt	294	39.69		
2x41A	721	40.76		
1hfeL	421	40.78	c.96.1.1,d.58.1.5	36018,39001
2x42A	721	41.31		
2vouA	397	42.01	c.3.1.2,d.16.1.2	153389,153390
1zvtA	256	42.10		
1k2xB	143	42.27		
1rlr	761	43.49		
1pb1A	416	43.76	c.77.1.1	88014
2bjfA	329	45.56		
3cmcO	334	47.25	c.2.1.3,d.81.1.1	156800,156801
1vk4A	298	48.22	c.72.1.1	100850
3i0zA	389	49.98		
3crrA	323	50.23		
2r5fA	264	50.57	c.124.1.8	151590
2ff4A	388	51.15	a.4.6.1,a.118.8.3,b.26.1.2	133367,133368,133369
1a9xA	1058	51.45	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18550,31479,31657,31658,41502,41503
3itvA	438	52.69		
1w0dA	337	55.24	c.77.1.1	114060
2g82A	331	55.41	c.2.1.3,d.81.1.1	134746,134747
1zjaA	557	55.49		
3enkA	341	57.45		
1wueA	386	57.60	c.1.11.2,d.54.1.1	114892,114893
1hqsA	423	58.44	c.77.1.1	61154
2wyeB	546	60.63		
1moqA	368	62.27	c.80.1.1	35302
1rlrA	761	62.33	a.98.1.1,c.7.1.2	18753,30679
1zh8A	340	63.20	c.2.1.3,d.81.1.5	125077,125078
3c3jA	384	64.78		
2pmbA	462	68.57		
1p9bA	442	69.86	c.37.1.10	94385
2h5yA	254	72.33		
1wn5A	130	72.96	c.97.1.1	121082
3jrqA	326	73.07		
2x5bA	761	74.31		
3kzgA	237	74.42		
3etcA	580	74.67		
1xt8A	292	74.70	c.94.1.1	122293
1h4pA	408	74.78	c.1.8.3	90617
1k8kA	418	77.54	c.55.1.1,c.55.1.1	68305,68306
1zwyA	185	78.37	c.51.4.3	125753
3h7rA	331	80.50		
3bmxA	642	81.04		
2eu9A	355	81.18		
3dxiA	320	82.46		
2h5eA	529	82.63		
1on3A	523	83.35	c.14.1.4,c.14.1.4	87107,87108
3fw7A	498	85.38		
3hufA	325	85.63		
3ll3A	504	86.88		
3k5iA	403	86.88		
3httB	160	87.89		
3gsyA	519	89.24		
1f8rA	498	89.47	c.3.1.2,d.16.1.5	30410,37974
3fj1A	344	89.89