# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2drhA	361	5.34e-33		
1b65A	375	4.15e-31	d.154.1.1	42020
1bx4A	345	1.760	c.72.1.1	34935
3ll3A	504	11.50		
1euzA	419	15.36	c.2.1.7,c.58.1.1	59513,59514
1rtqA	299	19.32	c.56.5.4	97819
3gbtA	504	21.31		
1e8gA	560	21.72	d.58.32.1,d.145.1.1	39455,41718
1b26A	416	23.17	c.2.1.7,c.58.1.1	30232,33880
1ct9A	553	24.57	c.26.2.1,d.153.1.1	31616,41834
3h2gA	397	30.13		
3bk2A	562	33.24		
2dcfA	392	34.10	e.3.1.1	146485
1pmmA	466	35.83	c.67.1.6	94901
3md7A	293	41.36		
2x42A	721	43.06		
2vpzA	765	43.17		
2x41A	721	43.25		
3ihjA	498	44.55		
2jdiA	510	48.81	a.69.1.1,b.49.1.1,c.37.1.11	145683,145684,145685
2r8bA	251	49.01	c.69.1.14	151696
1u8xX	472	50.00	c.2.1.5,d.162.1.2	107741,107742
3blyA	623	54.90		
3dghA	483	55.73		
3ii4A	466	58.38		
1wycA	392	59.29	e.3.1.1	145838
2vn4A	599	63.19		
1xl7A	612	63.30	c.43.1.3,c.43.1.3	115438,115439
1lehA	364	67.02	c.2.1.7,c.58.1.1	30268,33916
1m1cA	680	67.82	e.42.1.1	78395
1zsqA	528	67.85	b.55.1.8,c.45.1.3	125616,125617
2bmaA	470	71.16		
2cbnA	306	71.45	d.157.1.7	130191
3bmxA	642	71.72		
3fg2P	404	73.83		
3eqxA	373	78.15		
1y2mA	716	79.72		
2pbfA	227	83.09		
3d8bA	357	85.60		
2aaaA	484	86.73	b.71.1.1,c.1.8.1	27777,28764
2aexA	346	87.48		
1liiA	363	87.74	c.72.1.1	73921
2j3mA	572	88.03		
2yquA	455	88.72