# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2drhA	361	1.37e-34		
1b65A	375	1.16e-32	d.154.1.1	42020
2a8jA	420	4.326		
3bmxA	642	5.043		
1bx4A	345	5.473	c.72.1.1	34935
3ls2A	280	7.021		
2x42A	721	10.08		
2x41A	721	15.73		
2d5lA	706	29.72		
2wylA	360	32.78		
2fb9A	322	33.43		
2j22A	148	34.51		
1si6X	282	37.19	d.151.1.2	118968
1wb4A	297	37.34	c.69.1.2	120827
1liiA	363	39.59	c.72.1.1	73921
1dabA	539	40.01	b.80.1.7	28049
2qr5A	582	40.15	b.69.7.2,c.69.1.33	151278,151279
2wzxA	371	42.37		
3f81A	183	44.49		
3ighX	486	47.59		
1zsqA	528	48.52	b.55.1.8,c.45.1.3	125616,125617
2r8bA	251	48.57	c.69.1.14	151696
4ubpC	570	50.54	b.92.1.1,c.1.9.2	28431,29053
2ywwA	149	51.32		
1aipA	405	53.36	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
3h2gA	397	54.04		
2airB	153	54.07	d.58.2.1,g.41.7.1	126832,126833
1rwrA	301	56.64	b.80.1.11	97990
3hlkA	446	57.14		
3lk7A	451	57.45		
2d1cA	496	64.65		
1v0lA	313	67.49	c.1.8.3	108207
3cl6A	308	69.51		
1k2xB	143	70.42		
3fj1A	344	72.69		
2q6kA	283	76.00		
1pmmA	466	77.05	c.67.1.6	94901
1q0pA	223	79.45	c.62.1.1	95507
1zxxA	319	79.77		
3lkbA	392	80.01		
2cmgA	262	83.65		
3hagA	504	83.70		
1wyuB	474	83.72	c.67.1.7	121453
3djeA	438	84.68		
1tr9A	341	85.04	c.1.8.7	112617
1wycA	392	85.61	e.3.1.1	145838
3hpaA	479	86.92