# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2drhA	361	9.85e-41		
1b65A	375	2.81e-39	d.154.1.1	42020
3gd4A	511	12.19		
1m6iA	493	17.60	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
3c4uA	307	17.87		
1vz6A	393	23.86	d.154.1.2	108949
2j3tD	219	23.95		
3lp8A	442	25.49		
2ww5A	468	26.80		
2qcuA	501	27.58		
3e4fA	265	30.84		
2abqA	306	31.75	c.72.1.1	126528
2ywwA	149	32.79		
2v7bA	529	34.21		
1ush	550	34.40		
1p2hA	571	35.99	a.138.1.3,c.3.1.4,d.168.1.1	93930,93931,93932
1uc8A	280	36.36	c.30.1.6,d.142.1.7	99165,99166
3l09A	266	36.41		
3h20A	323	36.58		
1kutA	230	37.73	d.143.1.1	73017
1qb5D	99	40.46	b.40.2.1	88357
2r85A	334	43.87	c.30.1.8,d.142.1.9	151676,151677
1tiiD	99	44.80	b.40.2.1	24965
2al3A	90	46.90	d.15.1.2	126957
2zwrA	207	48.26		
2w70A	449	49.48		
2p8gA	162	49.50		
1b6rA	355	51.33	b.84.2.1,c.30.1.1,d.142.1.2	28241,31648,41493
3ie1A	431	51.87		
3lwbA	373	53.44		
3g8cA	444	54.81		
1zsqA	528	54.98	b.55.1.8,c.45.1.3	125616,125617
1ehiA	377	58.54	c.30.1.2,d.142.1.1	31716,41484
2g17A	337	58.70	c.2.1.3,d.81.1.1	134512,134513
3gm8A	801	58.73		
2odtX	328	59.71		
1zvtA	256	60.13		
1qo2A	241	62.08	c.1.2.1	28533
1nsj	205	64.85		
1nhsA	447	65.41	c.3.1.5,c.3.1.5,d.87.1.1	30555,30556,40199
2iswA	323	67.29		
1suuA	312	71.92	b.68.10.1	99006
1rkd	309	72.57		
1m2xA	223	74.82	d.157.1.1	84764
2fprA	176	75.08	c.108.1.19	133919
1rvgA	305	75.22	c.1.10.2	97920
1tfzA	424	78.26	d.32.1.3,d.32.1.3	106886,106887
1eyzA	392	78.50	b.84.2.1,c.30.1.1,d.142.1.2	28246,31653,41498
1nhpA	447	80.31	c.3.1.5,c.3.1.5,d.87.1.1	30549,30550,40196
1upqA	123	82.24	b.55.1.1	113392
3dthA	372	82.30		
2f6eA	127	87.96