# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2drhA	361	2.20e-30		
1b65A	375	2.08e-29	d.154.1.1	42020
2r85A	334	11.95	c.30.1.8,d.142.1.9	151676,151677
2qcuA	501	30.75		
1uc8A	280	36.80	c.30.1.6,d.142.1.7	99165,99166
1nsj	205	40.54		
1rkd	309	40.71		
2abqA	306	42.49	c.72.1.1	126528
1q0pA	223	43.90	c.62.1.1	95507
2j3tD	219	49.52		
2zwrA	207	51.22		
2agkA	260	53.59		
1ush	550	54.90		
2r5fA	264	55.49	c.124.1.8	151590
2odtX	328	59.65		
2g17A	337	60.55	c.2.1.3,d.81.1.1	134512,134513
2sliA	679	62.14	b.29.1.9,b.68.1.1	24274,27611
1m6iA	493	65.86	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
3g8cA	444	65.87		
3g8dA	444	67.07		
1vz6A	393	67.80	d.154.1.2	108949
2al3A	90	68.46	d.15.1.2	126957
1tfzA	424	68.47	d.32.1.3,d.32.1.3	106886,106887
1jv2A	957	69.29	b.1.15.1,b.1.15.1,b.1.15.1,b.69.8.1	67334,67335,67336,67337
1m2xA	223	70.07	d.157.1.1	84764
3hicA	320	70.32		
3c4uA	307	77.83		
3ht5A	368	81.77		
3ie7A	320	84.61		
3h4lA	367	86.33		
3e0iA	267	89.45