# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2drhA	361	7.20e-36		
1b65A	375	6.31e-35	d.154.1.1	42020
2j3tD	219	22.77		
2odtX	328	23.33		
3dfzA	223	31.90		
3l09A	266	50.48		
1nsj	205	51.78		
3lp8A	442	52.43		
1rkd	309	54.03		
2qcuA	501	58.02		
2zwrA	207	58.28		
1m2xA	223	60.11	d.157.1.1	84764
2r5fA	264	63.41	c.124.1.8	151590
2g17A	337	64.89	c.2.1.3,d.81.1.1	134512,134513
1tfzA	424	65.25	d.32.1.3,d.32.1.3	106886,106887
1qh5A	260	65.46	d.157.1.2	42057
3g8cA	444	65.76		
1uc8A	280	69.91	c.30.1.6,d.142.1.7	99165,99166
2sliA	679	70.97	b.29.1.9,b.68.1.1	24274,27611
1wimA	94	70.98	g.44.1.1	114677
1jv2A	957	71.46	b.1.15.1,b.1.15.1,b.1.15.1,b.69.8.1	67334,67335,67336,67337
2al3A	90	72.27	d.15.1.2	126957
1vz6A	393	72.41	d.154.1.2	108949
3lk42	277	77.38		
1q0pA	223	78.54	c.62.1.1	95507
3h4lA	367	83.01		
3i8bA	515	83.83		
1ido	192	85.51