# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2drhA 355 2.944e-47 1b65A 364 1.165e-43 1b65A d.154.1.1 42020 2vebA 191 4.508e-01 3ihrA 283 5.827e-01 1ejrC 554 5.859e-01 1ubpC b.92.1.1 28420 c.1.9.2 29042 2zexA 148 7.967e-01 2k3nA 161 8.121e-01 2k3oA 130 1.080e+00 1cisA 67 1.656e+00 k.1.1.1 46375 3a7sA 205 1.781e+00 1njhA 109 2.201e+00 b.128.1.1 85787 1qhbA 596 2.208e+00 1qhbA a.111.1.2 19055 2wdtA 205 2.308e+00 1u4gA 299 2.444e+00 d.92.1.2 107670 1uch 207 3.098e+00 1uch 1zu4A 306 3.105e+00 3lg3A 420 4.532e+00 1kcxA 477 5.167e+00 b.92.1.3 90953 c.1.9.6 90954 1vpmA 156 5.287e+00 d.38.1.1 113967 1e58A 248 5.512e+00 1qhfA c.60.1.1 59262 1xd3A 230 5.535e+00 d.3.1.6 115145 1xffA 239 5.702e+00 d.153.1.1 109580 3eqnA 753 6.280e+00 1up8A 598 6.347e+00 a.111.1.2 99710 2bitX 165 6.366e+00 b.62.1.1 128590 3i4eA 413 6.578e+00 3gqhA 164 6.987e+00 2q09A 403 7.301e+00 b.92.1.10 149984 c.1.9.17 149985 1hyt 317 8.116e+00 1hyt 1vbwA 69 8.297e+00 1go8P 461 8.897e+00 b.80.7.1 76247 d.92.1.6 76248 1dwmA 70 9.673e+00 1hymA d.40.1.1 38583 1hymA 45 1.062e+01 1hymA d.40.1.1 38581 1yndA 165 1.087e+01 b.62.1.1 123721 1rmgA 423 1.092e+01 b.80.1.3 28029 1ypcI 65 1.146e+01 2sniI d.40.1.1 38570 2jpjA 40 1.154e+01 1coaI 65 1.157e+01 2sniI d.40.1.1 38574 1qhfA 241 1.200e+01 1qhfA c.60.1.1 33960 2bkmA 129 1.210e+01 1g31A 108 1.268e+01 1g31A b.35.1.1 24656 1cmxA 215 1.311e+01 1uch d.3.1.6 37130 1s8eA 334 1.338e+01 d.159.1.4 105368 3c7tA 260 1.365e+01 1fwcC 567 1.376e+01 1ubpC b.92.1.1 28410 c.1.9.2 29032 1ciqA 38 1.379e+01 2sniI d.40.1.1 38576 1eysH 239 1.391e+01 6prcH b.41.1.1 25484 f.23.10.1 43517 1ezm 299 1.401e+01 1hyt 2pjzA 262 1.562e+01 2gokA 405 1.627e+01 b.92.1.10 147145 c.1.9.17 147146 2amnA 27 1.638e+01 2yvaA 194 1.652e+01 1onxA 390 1.675e+01 b.92.1.7 87176 c.1.9.13 87177 1q15A 492 1.700e+01 c.26.2.1 95538 d.153.1.1 95539 2gd9A 178 1.804e+01 2jsnA 97 1.809e+01 1to2I 64 1.836e+01 d.40.1.1 112596 2i2wA 193 1.877e+01 2k75A 107 1.900e+01 1ykhB 115 1.922e+01 a.252.1.1 123519 1ar72 269 1.941e+01 1aym2 1riiA 244 1.948e+01 c.60.1.1 111807 3d4iA 274 2.020e+01 1h80A 434 2.023e+01 b.80.1.8 65714 1ejjA 509 2.074e+01 1ejjA c.105.1.1 59422 c.76.1.3 59423 1lw6I 64 2.101e+01 d.40.1.1 74294 2p9bA 408 2.157e+01 b.92.1.10 149333 c.1.9.17 149334 1wp1A 457 2.200e+01 f.5.1.1 114778 1gycA 500 2.262e+01 b.6.1.3 70748 b.6.1.3 70749 b.6.1.3 70750 1fzdA 198 2.305e+01 3fib d.171.1.1 42484 2xblA 195 2.370e+01 1ujnA 339 2.421e+01 e.22.1.1 99460 8abpA 306 2.437e+01 c.93.1.1 35647 2cobA 71 2.478e+01 a.4.1.15 130673 2aqlA 159 2.534e+01 1svpA 161 2.537e+01 1svpA b.47.1.3 26384 1jniA 63 2.551e+01 a.138.1.3 71761 2puzA 405 2.573e+01 b.92.1.10 149873 c.1.9.17 149874 3le2A 394 2.584e+01 1k7gA 456 2.612e+01 b.80.7.1 77279 d.92.1.6 77280 1kyzA 351 2.650e+01 a.4.5.29 73312 c.66.1.12 73313 2qniA 195 2.669e+01 2qq2A 157 2.694e+01 1chd 199 2.735e+01 1chd 2oqzA 216 2.795e+01 b.100.1.1 139255 2kbnA 110 2.811e+01 2weeA 190 2.823e+01 1dfaA 406 2.845e+01 1vdeA b.86.1.2 28375 d.95.2.2 40575 d.95.2.2 40576 3g79A 476 2.878e+01 1b93A 149 2.893e+01 1b93A c.24.1.2 31507 2q4wA 492 2.901e+01 1ld4A 152 2.947e+01 i.6.1.1 77886 1bymA 98 2.969e+01 1bi0 b.34.1.2 24458 1fbtA 191 2.984e+01 1bif c.60.1.4 34004 1r17A 322 2.994e+01 b.2.3.4 96796 b.2.3.4 96797 1ngkA 127 2.997e+01 a.1.1.1 85673 1wxrA 1036 3.052e+01 2x3yA 203 3.073e+01 2p75A 172 3.142e+01 3fpfA 265 3.212e+01 1ct9A 498 3.326e+01 1ct9A c.26.2.1 31616 d.153.1.1 41834 2jhmF 218 3.407e+01 3kt9A 103 3.439e+01 1wi5A 120 3.466e+01 b.40.4.5 114661 1ejxC 557 3.480e+01 b.92.1.1 83184 c.1.9.2 83185 3d5kA 456 3.520e+01 1qyrA 253 3.556e+01 c.66.1.24 104657 3h04A 273 3.578e+01 1af0A 471 3.591e+01 1sat b.80.7.1 28017 d.92.1.6 40301 2vdxA 367 3.710e+01 1avpA 205 3.721e+01 1avpA d.3.1.7 37132 1aopA 457 3.841e+01 d.58.36.1 39501 d.58.36.1 39502 d.134.1.1 41425 d.134.1.1 41426 2ip2A 331 3.972e+01