PFRMAT SS TARGET T0587 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0587.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 359 METHOD MODEL 1 G C 0.733 P C 0.571 R H 0.284 A G 0.315 R G 0.311 D T 0.431 L C 0.530 G C 0.520 V C 0.437 P C 0.401 F C 0.361 E C 0.525 G C 0.509 T T 0.440 P C 0.398 G T 0.669 A T 0.768 L T 0.663 N T 0.586 A C 0.355 I E 0.385 T E 0.432 D T 0.501 V T 0.881 A T 0.909 G T 0.810 V E 0.714 E E 0.875 V E 0.892 G E 0.753 H E 0.826 T E 0.884 T E 0.889 V E 0.752 I E 0.537 S T 0.397 G T 0.494 D T 0.538 G T 0.635 A T 0.485 M T 0.521 V T 0.563 I T 0.498 G T 0.591 K T 0.544 G T 0.418 P T 0.334 Y T 0.295 R T 0.408 T T 0.508 G T 0.517 V E 0.551 T E 0.805 I E 0.921 I E 0.948 H E 0.840 P E 0.608 L T 0.568 G T 0.686 K T 0.700 T T 0.547 S C 0.288 L E 0.355 D E 0.370 G E 0.507 V E 0.649 A E 0.669 A E 0.833 G E 0.879 R E 0.888 A E 0.845 V E 0.624 I C 0.341 N T 0.524 G T 0.615 T T 0.589 G T 0.461 E E 0.357 W E 0.468 T E 0.641 G E 0.659 M E 0.639 H E 0.712 L E 0.552 V E 0.301 D H 0.234 E H 0.282 V H 0.322 G C 0.292 Q E 0.507 F E 0.706 L E 0.727 G E 0.814 P E 0.810 I E 0.735 A E 0.742 L E 0.608 T T 0.405 G T 0.483 T C 0.385 G C 0.366 N H 0.539 V H 0.971 G H 0.988 L H 0.988 V H 0.993 H H 0.999 Q H 0.999 S H 0.999 M H 1.000 M H 1.000 D H 1.000 W H 1.000 S H 0.999 V H 0.997 G H 0.982 K H 0.879 V C 0.495 P T 0.586 E T 0.639 E T 0.616 A C 0.485 L T 0.401 F T 0.464 S T 0.411 R T 0.386 L E 0.397 L T 0.391 P T 0.386 V E 0.409 V E 0.443 A T 0.381 E E 0.435 T E 0.529 L E 0.467 D E 0.342 N E 0.305 R C 0.303 L T 0.454 N T 0.501 D T 0.583 V T 0.587 F T 0.490 G T 0.499 H T 0.453 G C 0.502 L C 0.644 T C 0.794 R H 0.573 D H 0.653 H H 0.750 V H 0.891 F H 0.930 A H 0.909 A H 0.906 L H 0.913 D H 0.892 G H 0.806 A H 0.676 K H 0.379 G C 0.479 G C 0.628 P C 0.660 V C 0.446 A T 0.337 E T 0.397 G C 0.488 N T 0.429 V T 0.452 G T 0.455 G T 0.539 G T 0.603 T T 0.599 G T 0.561 M T 0.430 I T 0.265 A T 0.285 Y T 0.311 T C 0.452 F C 0.477 K C 0.499 G E 0.357 G T 0.347 I E 0.436 G E 0.422 T E 0.463 S E 0.546 S E 0.628 R E 0.799 V E 0.854 V E 0.816 S E 0.683 A T 0.597 G T 0.652 D T 0.720 T T 0.651 R T 0.399 Y E 0.891 T E 0.966 V E 0.987 G E 0.994 V E 0.991 L E 0.987 V E 0.975 Q E 0.958 A E 0.896 N E 0.736 H E 0.424 G T 0.454 D T 0.433 R C 0.456 N T 0.346 D T 0.361 L T 0.349 R T 0.559 I T 0.744 A T 0.833 G T 0.730 V C 0.319 Q E 0.423 I C 0.315 G C 0.393 K H 0.278 E H 0.315 I H 0.300 K H 0.324 G H 0.386 A T 0.333 W T 0.442 P T 0.428 E T 0.384 V T 0.400 N C 0.429 G C 0.460 I C 0.526 V C 0.482 A C 0.460 A C 0.372 G C 0.382 P C 0.396 D T 0.343 A T 0.370 G C 0.402 K C 0.466 P C 0.516 Q T 0.488 D T 0.782 K T 0.822 N T 0.765 S E 0.666 L E 0.953 L E 0.986 I E 0.992 V E 0.986 I E 0.981 A E 0.882 T E 0.493 D C 0.595 A C 0.542 P C 0.795 L C 0.805 M C 0.846 P H 0.961 H H 0.976 Q H 0.983 L H 0.991 E H 0.994 R H 0.990 M H 0.992 A H 0.988 R H 0.970 R H 0.953 A H 0.921 A H 0.876 L H 0.875 G H 0.725 V H 0.785 G H 0.675 R H 0.475 N H 0.313 G C 0.525 S T 0.429 T T 0.573 A T 0.583 G T 0.612 A T 0.707 L T 0.646 S T 0.561 G T 0.435 E E 0.510 F E 0.944 A E 0.954 L E 0.936 A E 0.886 F E 0.765 S E 0.538 T E 0.458 S E 0.314 H C 0.395 V C 0.481 I C 0.559 P C 0.615 L C 0.553 G C 0.471 G T 0.447 K T 0.438 P T 0.487 R T 0.452 L C 0.371 P T 0.294 A C 0.314 I C 0.296 I C 0.227 N C 0.243 D C 0.321 T C 0.470 D C 0.521 S H 0.469 E H 0.592 T H 0.659 M H 0.951 N H 0.979 A H 0.997 L H 0.998 F H 1.000 R H 1.000 G H 1.000 V H 1.000 V H 1.000 Q H 0.999 A H 0.997 T H 0.998 E H 0.999 E H 0.999 A H 0.998 L H 0.998 V H 0.999 N H 0.998 Q H 0.995 L H 0.992 V H 0.963 A H 0.898 S H 0.736 E H 0.386 T C 0.435 M T 0.453 T T 0.476 G T 0.828 A T 0.901 N T 0.865 N T 0.855 A T 0.329 K E 0.654 V E 0.690 Y E 0.558 G E 0.393 I C 0.645 P C 0.790 H H 0.867 D H 0.907 Q H 0.967 L H 0.989 A H 0.997 R H 0.993 I H 0.992 M H 0.991 K H 0.980 A H 0.882 R H 0.645 F C 0.598 P C 0.619 R C 0.692 R C 0.967 END