PFRMAT SS
TARGET T0587
AUTHOR SAM-T02-server 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0587.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0587.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0587.t2k.str.rdb  (weight 1.53983)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0587.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0587
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0587.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 359
METHOD
METHOD ============================================
METHOD Comments from T0587.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0587
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0587.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 359
METHOD
METHOD ============================================
METHOD Comments from T0587.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0587
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0587.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 359
METHOD
METHOD ============================================
MODEL 1
G C 0.95
P C 0.71
R H 0.57
A H 0.65
R H 0.61
D C 0.65
L C 0.90
G C 0.84
V C 0.62
P C 0.59
F C 0.73
E C 0.75
G C 0.86
T C 0.86
P C 0.83
G C 0.90
A C 0.82
L C 0.75
N C 0.66
A C 0.54
I E 0.51
T E 0.59
D C 0.64
V C 0.77
A C 0.89
G C 0.84
V E 0.68
E E 0.88
V E 0.84
G E 0.76
H E 0.76
T E 0.78
T E 0.84
V E 0.76
I E 0.54
S C 0.68
G C 0.83
D C 0.82
G C 0.79
A C 0.71
M C 0.66
V C 0.73
I C 0.82
G C 0.87
K C 0.85
G C 0.77
P C 0.62
Y C 0.53
R C 0.50
T C 0.54
G C 0.60
V E 0.66
T E 0.86
I E 0.92
I E 0.91
H E 0.77
P C 0.58
L C 0.87
G C 0.90
K C 0.82
T C 0.61
S C 0.52
L C 0.46
D C 0.58
G C 0.56
V C 0.48
A E 0.59
A E 0.75
G E 0.78
R E 0.74
A E 0.70
V E 0.58
I C 0.63
N C 0.83
G C 0.85
T C 0.82
G C 0.78
E C 0.65
W C 0.58
T C 0.56
G C 0.53
M C 0.45
H C 0.38
L H 0.40
V H 0.57
D H 0.59
E H 0.62
V H 0.46
G C 0.50
Q E 0.42
F E 0.60
L E 0.61
G E 0.66
P E 0.70
I E 0.81
A E 0.82
L E 0.67
T C 0.52
G C 0.78
T C 0.74
G C 0.51
N H 0.56
V H 0.95
G H 0.97
L H 0.97
V H 0.97
H H 0.97
Q H 0.97
S H 0.97
M H 0.98
M H 0.98
D H 0.98
W H 0.97
S H 0.97
V H 0.97
G H 0.91
K H 0.77
V C 0.83
P C 0.82
E C 0.84
E C 0.85
A C 0.86
L C 0.80
F C 0.82
S C 0.81
R C 0.64
L C 0.52
L C 0.63
P C 0.60
V E 0.48
V C 0.46
A C 0.43
E C 0.38
T C 0.37
L C 0.44
D C 0.50
N C 0.48
R C 0.50
L C 0.59
N C 0.66
D C 0.76
V C 0.74
F C 0.79
G C 0.75
H C 0.77
G C 0.78
L C 0.85
T C 0.93
R H 0.67
D H 0.80
H H 0.87
V H 0.93
F H 0.95
A H 0.94
A H 0.94
L H 0.94
D H 0.89
G H 0.78
A H 0.65
K C 0.66
G C 0.83
G C 0.89
P C 0.83
V C 0.59
A C 0.55
E C 0.64
G C 0.80
N C 0.70
V C 0.68
G C 0.69
G C 0.71
G C 0.69
T C 0.63
G C 0.58
M C 0.42
I H 0.38
A C 0.40
Y C 0.55
T C 0.65
F C 0.65
K C 0.72
G C 0.71
G C 0.66
I C 0.55
G E 0.48
T E 0.60
S E 0.72
S E 0.80
R E 0.88
V E 0.90
V E 0.87
S E 0.68
A C 0.71
G C 0.88
D C 0.88
T C 0.85
R C 0.52
Y E 0.84
T E 0.94
V E 0.97
G E 0.97
V E 0.98
L E 0.98
V E 0.96
Q E 0.93
A E 0.80
N E 0.55
H C 0.62
G C 0.77
D C 0.82
R C 0.76
N C 0.64
D C 0.62
L C 0.61
R C 0.74
I C 0.77
A C 0.90
G C 0.89
V C 0.69
Q E 0.49
I C 0.48
G C 0.50
K H 0.42
E H 0.46
I H 0.46
K H 0.46
G C 0.50
A C 0.57
W C 0.61
P C 0.56
E C 0.58
V C 0.68
N C 0.70
G C 0.68
I C 0.71
V C 0.70
A C 0.67
A C 0.62
G C 0.63
P C 0.65
D C 0.64
A C 0.67
G C 0.72
K C 0.81
P C 0.84
Q C 0.85
D C 0.86
K C 0.90
N C 0.91
S E 0.50
L E 0.92
L E 0.97
I E 0.98
V E 0.97
I E 0.93
A E 0.76
T C 0.58
D C 0.85
A C 0.89
P C 0.91
L C 0.92
M C 0.92
P H 0.94
H H 0.95
Q H 0.97
L H 0.97
E H 0.97
R H 0.97
M H 0.97
A H 0.96
R H 0.94
R H 0.91
A H 0.86
A H 0.76
L H 0.72
G H 0.65
V H 0.64
G H 0.52
R C 0.38
N C 0.55
G C 0.80
S C 0.81
T C 0.75
A C 0.79
G C 0.84
A C 0.85
L C 0.84
S C 0.81
G C 0.73
E C 0.53
F E 0.81
A E 0.87
L E 0.83
A E 0.79
F E 0.61
S C 0.48
T C 0.62
S C 0.71
H C 0.72
V C 0.77
I C 0.82
P C 0.86
L C 0.85
G C 0.87
G C 0.83
K C 0.81
P C 0.81
R C 0.78
L C 0.69
P C 0.58
A C 0.52
I C 0.48
I C 0.42
N C 0.42
D C 0.51
T C 0.70
D C 0.79
S H 0.58
E H 0.67
T H 0.72
M H 0.88
N H 0.93
A H 0.97
L H 0.97
F H 0.98
R H 0.98
G H 0.98
V H 0.98
V H 0.97
Q H 0.97
A H 0.97
T H 0.98
E H 0.97
E H 0.97
A H 0.97
L H 0.97
V H 0.97
N H 0.97
Q H 0.97
L H 0.95
V H 0.90
A H 0.77
S H 0.58
E C 0.56
T C 0.66
M C 0.67
T C 0.65
G C 0.87
A C 0.90
N C 0.91
N C 0.90
A C 0.70
K E 0.66
V E 0.60
Y C 0.50
G C 0.61
I C 0.75
P C 0.92
H H 0.91
D H 0.95
Q H 0.97
L H 0.97
A H 0.97
R H 0.97
I H 0.97
M H 0.97
K H 0.96
A H 0.86
R H 0.71
F C 0.84
P C 0.89
R C 0.89
R C 0.99
END