# List of top-scoring protein chains for t2k.100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2drhA 361 1.22e-54 1b65A 375 1.06e-49 1b65A d.154.1.1 42020 3it4B 205 8.10e-02 1vz6A 393 2.10e-01 d.154.1.2 108949 2ap1A 327 4.10e-01 c.55.1.10 127108 c.55.1.10 127109 1e4eA 343 6.69e-01 1iow c.30.1.2 59221 d.142.1.1 59222 2v4iB 213 8.67e-01 2pqmA 343 2.35e+00 1adeA 431 2.41e+00 1adeA c.37.1.10 32213 2ja2A 498 3.26e+00 1lghA 56 4.02e+00 1lghA f.3.1.1 43733 3ixbA 358 4.43e+00 3iwiA 361 5.38e+00 1l0gA 358 5.56e+00 e.3.1.1 73400 2ffyA 358 6.14e+00 e.3.1.1 133394 3iwoA 358 6.50e+00 3g5bA 405 6.52e+00 1zjkA 403 7.86e+00 b.47.1.2 125149 g.18.1.1 125150 g.18.1.1 125151 1fsyA 358 8.70e+00 1gceA e.3.1.1 60016 1qf5A 431 8.90e+00 1adeA c.37.1.10 32212 1augA 215 9.90e+00 1a2zA c.56.4.1 33798 3e0hA 158 1.22e+01 2j1vA 151 1.22e+01 2h57A 190 1.26e+01 1vraB 215 1.41e+01 2if6A 186 1.43e+01 d.3.1.21 147651 3a32A 471 1.47e+01 2zmvA 227 1.48e+01 2z4tA 514 1.54e+01 3fbxA 559 1.67e+01 1frdA 98 1.93e+01 d.15.4.1 37648 2vchA 480 1.98e+01 c.87.1.10 152917 3k4iA 244 2.01e+01 3ixgA 358 2.02e+01 1xtqA 177 2.06e+01 c.37.1.8 122297 2nw0A 189 2.09e+01 2fcbA 173 2.15e+01 2fcbA b.1.1.4 21781 b.1.1.4 21782 3ixdA 358 2.17e+01 1upqA 123 2.22e+01 b.55.1.1 113392 2anrA 178 2.29e+01 1l3aA 228 2.33e+01 d.18.1.2 73531 1euzA 419 2.33e+01 1k89 c.2.1.7 59513 c.58.1.1 59514 2vijA 392 2.35e+01 1ybxA 143 2.37e+01 1su0B 159 2.37e+01 d.224.1.2 106015 1zc1A 208 2.40e+01 1byuA 216 2.40e+01 1byuA c.37.1.8 32032 2lbd 267 2.40e+01 2lbd 3inmA 425 2.55e+01 2f4wA 187 2.57e+01 d.20.1.1 132958 1f8vA 355 2.60e+01 2bbvA b.121.4.4 23329 1ymmA 191 2.61e+01 b.1.1.2 123701 d.19.1.1 123702 1y7pA 223 2.61e+01 c.23.1.7 122708 d.58.18.12 122709 1clc 639 2.66e+01 1clc 1clcA 639 2.66e+01 a.102.1.2 18835 b.1.18.2 21872 2qx0A 159 2.69e+01 3ehwA 164 2.74e+01 b.85.4.1 158154 2oplA 187 2.78e+01 d.227.1.1 148966 2g6bA 180 2.85e+01 c.37.1.8 134701 1mkeA 152 2.87e+01 b.55.1.4 79231 3fd5A 394 2.89e+01 2xcyA 386 3.10e+01 1t70A 255 3.11e+01 d.159.1.9 112275 2dpyA 438 3.13e+01 2bcgY 206 3.14e+01 c.37.1.8 128285 2bhvA 246 3.17e+01 1qg4A 216 3.17e+01 1byuA c.37.1.8 32035 2qj8A 332 3.20e+01 2ifsA 169 3.24e+01 3f59A 161 3.25e+01 3giuA 215 3.31e+01 1z2aA 168 3.33e+01 c.37.1.8 124374 3k3kA 211 3.57e+01 3dszA 186 3.59e+01 1x6vA 630 3.74e+01 b.122.1.3 121755 c.26.1.5 121756 c.37.1.4 121757 1kw3B 292 3.92e+01 d.32.1.3 77549 d.32.1.3 77550 2r15A 212 3.96e+01