# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 4.38e-14 2wv0A 243 3.32e-12 3ic7A 126 5.51e-12 2ek5A 129 8.27e-12 1hw1A 239 1.52e-11 a.4.5.6,a.78.1.1 16111,18441 3edpA 236 1.55e-11 1e2xA 243 2.01e-11 a.4.5.6,a.78.1.1 16113,18443 2di3A 239 2.03e-11 3eetA 274 2.14e-11 3bwgA 239 4.16e-11 a.4.5.6,d.190.1.2 155693,155694 2hs5A 239 1.06e-09 a.4.5.6,a.78.1.1 147379,147380 3f8mA 248 1.07e-09 3c7jA 237 2.89e-09 3fmsA 209 4.73e-09 3ihuA 222 7.65e-09 1on2A 142 0.01090 a.4.5.24,a.76.1.1 87103,87104 1b1bA 140 0.03054 a.4.5.24,a.76.1.1 16215,18421 2d1hA 109 0.03097 a.4.5.50 131125 2dtr 226 0.04346 1bi0 226 0.04711 1fx7A 230 0.04793 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2hr3A 147 0.05401 a.4.5.28 136678 1c0wA 225 0.05427 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2h09A 155 0.05851 1f5tA 121 0.05901 a.4.5.24,a.76.1.1 16203,18409 2qq9A 226 0.05933 1ub9A 100 0.07998 a.4.5.28 99159 3k0lA 162 0.08802 1sfxA 109 0.1003 a.4.5.50 105505 2ev0A 142 0.1271 a.4.5.24,a.76.1.1 132413,132414 2oqgA 114 0.1289 3cdhA 155 0.1409 3ctaA 230 0.1612 a.4.5.28,b.43.5.2 156979,156980 1y0uA 96 0.1746 a.4.5.5 116310 1zybA 232 0.2036 a.4.5.4,b.82.3.2 125815,125816 2ethA 154 0.2233 a.4.5.28 132358 2fbkA 181 0.2378 a.4.5.28 133247 1biaA 321 0.2551 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2nyxA 168 0.2620 3f3xA 144 0.2725 3gw2A 108 0.2875 1jgsA 138 0.2939 a.4.5.28 66683 2nnnA 140 0.2986 2rdpA 150 0.3022 3gflA 146 0.3095 2ia0A 171 0.3242 3d0sA 227 0.3285 3f6oA 118 0.3484 2zdbA 195 0.3567 3hsrA 140 0.3617 2bv6A 142 0.3748 a.4.5.28 146218 3echA 142 0.3769 3bddA 142 0.3804 3ecoA 139 0.3837 1xd7A 145 0.3858 a.4.5.55 109566 2fbiA 142 0.4184 a.4.5.28 133246 3f6vA 151 0.4192 2gxgA 146 0.4198 3fm5A 150 0.4207 1s3jA 155 0.4231 a.4.5.28 98437 2g7uA 257 0.4722 3boqA 160 0.4764 1g6nA 210 0.4828 a.4.5.4,b.82.3.2 16100,28139 3k69A 162 0.4900 1lj9A 144 0.5005 a.4.5.28 78035 2pexA 153 0.5328 2dtrA 226 0.5540 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 3g3zA 145 0.5557 3bpvA 138 0.5636 1pdnC 128 0.5736 a.4.1.5 16047 2fbhA 146 0.5777 a.4.5.28 133245 2a61A 145 0.5868 a.4.5.28 126187 3lwfA 159 0.6080 3jthA 98 0.6257 3cuoA 99 0.6352 1j5yA 187 0.6405 a.4.5.1,d.94.2.1 71592,71593 3gfjA 146 0.6453 1lnwA 147 0.6722 a.4.5.28 78104 3e6mA 161 0.7249 3deuA 166 0.7381 a.4.5.28 157600 1p4xA 250 0.7522 a.4.5.28,a.4.5.28 87784,87785 1bia 321 0.7685 3bjaA 139 0.8123 1smtA 122 0.8423 a.4.5.5 16109 2qwwA 154 0.8561 3gfmA 146 0.8621 2fa5A 162 0.8858 2o0yA 260 0.9756 2ia2A 265 1.025 2fnaA 357 1.128 a.4.5.11,c.37.1.20 133809,133810 3bj6A 152 1.218 2hoeA 380 1.281 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3cjnA 162 1.286 1z91A 147 1.326 a.4.5.28 124736 1i6xA 209 1.354 a.4.5.4,b.82.3.2 83673,83674 1ulyA 192 1.357 a.4.5.58 113297 1r1tA 122 1.434 a.4.5.5 104769 2b0lA 102 1.494 a.4.5.66 127641 1u2wA 122 1.556 a.4.5.5 119487 1i1gA 141 1.563 a.4.5.32,d.58.4.2 65982,65983 1lea 84 1.581 1okrA 123 1.606 a.4.5.39 93269 3e97A 231 1.637 1r1uA 106 1.690 a.4.5.5 104771 2cohA 202 1.701 a.4.5.4,b.82.3.2 130677,130678 2frhA 127 1.709 a.4.5.28 133988 3e5xA 250 1.728 1mkmA 249 1.766 a.4.5.33,d.110.2.2 79242,79243 2w25A 150 1.784 1ft9A 222 1.809 a.4.5.4,b.82.3.1 16107,28131 2qvoA 95 2.002 1lvaA 258 2.056 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2pjpA 121 2.273 2ivmA 150 2.403 1hw5A 210 2.405 a.4.5.4,b.82.3.2 16098,28137 2h6cA 232 2.425 a.4.5.4,b.82.3.2 147232,147233 2zcwA 202 2.453 2gauA 232 2.673 a.4.5.4,b.82.3.2 134894,134895 3dv8A 220 2.792 3kfwX 247 2.851 2bgcA 238 3.449 a.4.5.4,b.82.3.3 128458,128459 3broA 141 3.473 a.4.5.28 155517 1g2hA 61 3.739 a.4.1.12 60224 2v79A 135 4.014 2pn6A 150 4.155 1trrA 107 4.230 a.4.12.1 19017 2cfxA 144 4.231 a.4.5.32,d.58.4.2 130395,130396 2cgpA 210 4.441 a.4.5.4,b.82.3.2 16102,28141 2dbbA 151 4.582 3fx3A 237 4.592 1jhgA 101 4.614 a.4.12.1 19009 1z6rA 406 4.655 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2e7xA 150 5.020 3f8bA 116 5.235 3e6cC 250 5.249 a.4.5.4,b.82.3.2 158038,158039 2qz8A 149 5.425 1ri7A 171 5.645 a.4.5.32,d.58.4.2 97504,97505 1sd4A 126 6.926 a.4.5.39 105428 2dqlA 115 7.208 2h6bA 250 7.210 a.4.5.4,b.82.3.2 147228,147229 3bp8A 406 7.477 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1wsuA 124 7.599 a.4.5.35,a.4.5.35 121245,121246 1qbjA 81 7.949 a.4.5.19 16155 2cg4A 152 8.100 a.4.5.32,d.58.4.2 130417,130418 1rcsA 105 8.153 a.4.12.1 19025 2e1nA 138 8.456 3go5A 285 8.740 3l09A 266 9.140 1jhfA 202 9.269 a.4.5.2,b.87.1.1 63057,63058 2f2eA 146 9.905 a.4.5.69 132808 2zkzA 99 9.98 2p8tA 200 10.02 a.4.5.72,d.74.4.2 149315,149316 3h3zA 235 11.10 3dp7A 363 11.18 2qlzA 232 11.21 1mzbA 136 11.68 a.4.5.42 91497 2fe3A 145 11.72 3lmmA 583 12.32 2w57A 150 12.98 2fu4A 83 14.03 2b5aA 77 15.31 a.35.1.3 127882 1q1hA 110 16.09 a.4.5.41 95580 1b4aA 149 16.70 a.4.5.3,d.74.2.1 16088,39721 3i4pA 162 16.94 1utxA 66 17.00 a.35.1.3 108034 2cro 71 17.17 3eqxA 373 17.90 1z1dA 103 19.72 a.4.5.16 124351 1jboA 162 19.92 a.1.1.3 84150 1r69 69 19.99 1b0nA 111 20.58 a.34.1.1,a.35.1.3 17001,17064 1ret 43 20.60 2obpA 96 20.85 a.4.5.71 148718 2r1jL 68 20.99 a.35.1.2 151525 1lliA 92 21.33 a.35.1.2 17025 2p5vA 162 21.45 2cyyA 151 21.64 a.4.5.32,d.58.4.2 131028,131029 2rn7A 108 22.62 1resA 43 22.96 a.4.1.2 16023 2ebyA 113 23.08 3eyyA 145 24.03 2ictA 94 26.21 a.35.1.3 147605 3bs3A 76 27.01 1y7yA 74 27.41 a.35.1.3 122729 1tbxA 99 27.49 a.4.5.48 106748 3mkwB 138 27.94 1yg2A 179 28.68 a.4.5.61 116681 3hhhA 116 29.13 2fmyA 220 29.72 2r3sA 335 30.16 3cecA 104 30.18 2eq8C 40 30.45 1y9qA 192 30.56 a.35.1.8,b.82.1.15 116592,116593 3h7uA 335 32.34 1mtpA 323 32.81 e.1.1.1 85107 3jw4A 148 34.18 2k9qA 77 34.37 2g9wA 138 34.67 a.4.5.39 147097 2ip2A 334 36.37 1adrA 76 36.82 a.35.1.2 17042 3majA 382 38.98 1ylfA 149 39.21 a.4.5.55 123648 1jboB 172 40.41 a.1.1.3 84151 3i71A 68 41.18 1x19A 359 41.28 1j9iA 68 43.46 a.6.1.5 71619 3gwzA 369 44.12 2jvlA 107 44.32 1ktpA 162 45.62 a.1.1.3 72990 2v9vA 135 46.87 a.4.5.35,a.4.5.35 152809,152810 1kn1A 160 47.14 a.1.1.3 77455 2fk8A 318 48.11 c.66.1.18 133648 3fmyA 73 49.13 1rp3A 239 49.49 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 3ir1A 245 50.09 1qgpA 77 50.77 a.4.5.19 16158 3f7jA 276 51.43 1tw3A 360 52.88 a.4.5.29,c.66.1.12 107373,107374 1liaA 164 54.77 a.1.1.3 15661 1kn1B 161 54.88 a.1.1.3 77456 2wzmA 283 55.02 6paxA 133 57.69 a.4.1.5,a.4.1.5 64758,64759 3mn2A 108 57.73 1hstA 90 58.51 a.4.5.13 16140 3h7rA 331 60.28 1b8dA 164 62.32 a.1.1.3 15665 3mkzA 121 62.35 2g9mA 133 63.09 2fjrA 189 63.14 1phnA 162 63.79 a.1.1.3 15641 3lstA 348 63.87 1cpcA 162 64.15 a.1.1.3 15643 1lmb3 92 65.28 3mklA 120 66.93 3buvA 326 68.14 2hztA 107 70.38 a.4.5.69 147462 1hkqA 132 72.68 a.4.5.10 83555 1xs5A 241 73.26 c.94.1.1 115912 1lbuA 213 74.16 a.20.1.1,d.65.1.1 16416,39549 1gdtA 183 74.18 a.4.1.2,c.53.1.1 16021,33348 3mkyB 189 74.39 2gqqA 163 75.55 2k9lA 76 78.10 1ufmA 84 79.28 a.4.5.47 107816 2eljA 88 81.95 1c7nA 399 83.40 c.67.1.3 34413 3iwfA 107 83.85 1qgwC 177 83.96 a.1.1.3 15673 1vctA 205 84.00 a.7.12.1,d.286.1.1 119986,119987 1p99A 295 85.65 c.94.1.1 94384 2fswA 107 85.71 a.4.5.69 134042 2o3fA 111 86.11 a.4.1.20 148573 1qzzA 374 87.02 a.4.5.29,c.66.1.12 96719,96720 3bz6A 183 88.19 a.4.5.75,a.4.5.75 155739,155740 1oyiA 82 88.34 a.4.5.19 93729 2ef8A 84 88.65