# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 6.17e-15 3ic7A 126 2.09e-13 2wv0A 243 5.70e-13 2ek5A 129 1.11e-12 1hw1A 239 3.92e-12 a.4.5.6,a.78.1.1 16111,18441 3edpA 236 3.98e-12 3eetA 274 5.69e-12 1e2xA 243 5.93e-12 a.4.5.6,a.78.1.1 16113,18443 2di3A 239 9.56e-12 3bwgA 239 1.45e-11 a.4.5.6,d.190.1.2 155693,155694 3f8mA 248 2.52e-10 2hs5A 239 7.37e-10 a.4.5.6,a.78.1.1 147379,147380 3c7jA 237 8.54e-10 3fmsA 209 1.78e-09 3ihuA 222 2.01e-09 1on2A 142 0.002172 a.4.5.24,a.76.1.1 87103,87104 1b1bA 140 0.004484 a.4.5.24,a.76.1.1 16215,18421 1f5tA 121 0.008052 a.4.5.24,a.76.1.1 16203,18409 1fx7A 230 0.008481 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 0.008553 1bi0 226 0.008692 2h09A 155 0.01119 2qq9A 226 0.01427 2d1hA 109 0.01501 a.4.5.50 131125 1c0wA 225 0.01533 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2ev0A 142 0.01850 a.4.5.24,a.76.1.1 132413,132414 1ub9A 100 0.02301 a.4.5.28 99159 2hr3A 147 0.02545 a.4.5.28 136678 1sfxA 109 0.03013 a.4.5.50 105505 3k0lA 162 0.03301 2zdbA 195 0.03429 1pdnC 128 0.03648 a.4.1.5 16047 3cdhA 155 0.05058 1zybA 232 0.05944 a.4.5.4,b.82.3.2 125815,125816 3d0sA 227 0.06431 3ctaA 230 0.06770 a.4.5.28,b.43.5.2 156979,156980 1y0uA 96 0.07838 a.4.5.5 116310 1biaA 321 0.08212 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2nyxA 168 0.08681 1xd7A 145 0.08729 a.4.5.55 109566 3k69A 162 0.09023 2pexA 153 0.09723 3fm5A 150 0.09940 2ethA 154 0.1010 a.4.5.28 132358 1j5yA 187 0.1029 a.4.5.1,d.94.2.1 71592,71593 3gw2A 108 0.1038 3f3xA 144 0.1046 2nnnA 140 0.1127 3gflA 146 0.1173 2rdpA 150 0.1223 3lwfA 159 0.1231 2g7uA 257 0.1318 1s3jA 155 0.1354 a.4.5.28 98437 1bia 321 0.1409 3hsrA 140 0.1411 2gxgA 146 0.1464 3f6oA 118 0.1492 3bddA 142 0.1569 2fbkA 181 0.1616 a.4.5.28 133247 1lj9A 144 0.1621 a.4.5.28 78035 3ecoA 139 0.1651 2cohA 202 0.1658 a.4.5.4,b.82.3.2 130677,130678 1jgsA 138 0.1666 a.4.5.28 66683 2oqgA 114 0.1679 3g3zA 145 0.1715 2ia0A 171 0.1724 3e6mA 161 0.1822 3jthA 98 0.1864 1smtA 122 0.1940 a.4.5.5 16109 2fbiA 142 0.1960 a.4.5.28 133246 3deuA 166 0.1964 a.4.5.28 157600 3echA 142 0.1969 2fbhA 146 0.1969 a.4.5.28 133245 2qwwA 154 0.1993 3gfjA 146 0.2335 2zcwA 202 0.2438 3bpvA 138 0.2602 2dtrA 226 0.2805 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 3gfmA 146 0.2901 2a61A 145 0.2916 a.4.5.28 126187 1g6nA 210 0.2923 a.4.5.4,b.82.3.2 16100,28139 3dv8A 220 0.3088 3f6vA 151 0.3262 1r1tA 122 0.3365 a.4.5.5 104769 1lnwA 147 0.3383 a.4.5.28 78104 3cuoA 99 0.3562 2ia2A 265 0.3592 1ft9A 222 0.3605 a.4.5.4,b.82.3.1 16107,28131 2fa5A 162 0.3704 3bj6A 152 0.3796 2b0lA 102 0.3940 a.4.5.66 127641 1p4xA 250 0.4121 a.4.5.28,a.4.5.28 87784,87785 3e97A 231 0.4126 3e5xA 250 0.4138 2o0yA 260 0.4142 2gauA 232 0.4225 a.4.5.4,b.82.3.2 134894,134895 3fx3A 237 0.4232 1i6xA 209 0.4385 a.4.5.4,b.82.3.2 83673,83674 1u2wA 122 0.4630 a.4.5.5 119487 3cjnA 162 0.4672 2bv6A 142 0.4755 a.4.5.28 146218 1z91A 147 0.4897 a.4.5.28 124736 1r1uA 106 0.4979 a.4.5.5 104771 2hoeA 380 0.5277 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3boqA 160 0.5333 3kfwX 247 0.6123 1i1gA 141 0.6202 a.4.5.32,d.58.4.2 65982,65983 1ulyA 192 0.6306 a.4.5.58 113297 1mkmA 249 0.6658 a.4.5.33,d.110.2.2 79242,79243 3bjaA 139 0.7162 2frhA 127 0.8256 a.4.5.28 133988 2pjpA 121 0.9057 1lea 84 0.9171 3e6cC 250 0.9256 a.4.5.4,b.82.3.2 158038,158039 2h6cA 232 1.002 a.4.5.4,b.82.3.2 147232,147233 3h3zA 235 1.033 2h6bA 250 1.108 a.4.5.4,b.82.3.2 147228,147229 2pn6A 150 1.166 1hw5A 210 1.221 a.4.5.4,b.82.3.2 16098,28137 1z6rA 406 1.224 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1lvaA 258 1.249 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1okrA 123 1.254 a.4.5.39 93269 1trrA 107 1.266 a.4.12.1 19017 1jhgA 101 1.296 a.4.12.1 19009 2qvoA 95 1.349 2cgpA 210 1.447 a.4.5.4,b.82.3.2 16102,28141 3bp8A 406 1.453 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2cfxA 144 1.526 a.4.5.32,d.58.4.2 130395,130396 2e7xA 150 1.541 2w25A 150 1.558 3broA 141 1.590 a.4.5.28 155517 2dbbA 151 1.621 2ivmA 150 1.641 2fnaA 357 1.707 a.4.5.11,c.37.1.20 133809,133810 2v79A 135 1.804 1jhfA 202 2.076 a.4.5.2,b.87.1.1 63057,63058 2qz8A 149 2.079 1qbjA 81 2.164 a.4.5.19 16155 3go5A 285 2.249 3eqxA 373 2.357 2fmyA 220 2.526 2f2eA 146 2.552 a.4.5.69 132808 2cg4A 152 2.620 a.4.5.32,d.58.4.2 130417,130418 6paxA 133 2.837 a.4.1.5,a.4.1.5 64758,64759 2p8tA 200 2.957 a.4.5.72,d.74.4.2 149315,149316 2qlzA 232 3.010 2zkzA 99 3.594 2cyyA 151 3.609 a.4.5.32,d.58.4.2 131028,131029 1ylfA 149 3.641 a.4.5.55 123648 2bgcA 238 3.904 a.4.5.4,b.82.3.3 128458,128459 1wsuA 124 3.982 a.4.5.35,a.4.5.35 121245,121246 1q1hA 110 4.079 a.4.5.41 95580 2obpA 96 4.189 a.4.5.71 148718 1rcsA 105 4.301 a.4.12.1 19025 1g2hA 61 4.430 a.4.1.12 60224 3i4pA 162 4.588 2dqlA 115 4.912 2b5aA 77 4.994 a.35.1.3 127882 3dp7A 363 5.096 1utxA 66 5.419 a.35.1.3 108034 1k78A 149 5.515 a.4.1.5,a.4.1.5 68255,68256 2cro 71 5.607 2fe3A 145 5.806 3majA 382 5.819 3irrA 67 5.969 3l09A 266 5.978 1sd4A 126 6.021 a.4.5.39 105428 2r1jL 68 6.081 a.35.1.2 151525 2e1nA 138 6.138 1r69 69 6.255 1b0nA 111 6.330 a.34.1.1,a.35.1.3 17001,17064 1mzbA 136 6.683 a.4.5.42 91497 3f8bA 116 6.693 2p5vA 162 7.285 1adrA 76 7.316 a.35.1.2 17042 3bs3A 76 7.875 1b4aA 149 8.181 a.4.5.3,d.74.2.1 16088,39721 3gwzA 369 8.197 1qgpA 77 8.212 a.4.5.19 16158 2r3sA 335 8.226 2zhgA 154 8.448 3lmmA 583 8.454 2gqqA 163 8.573 2ictA 94 8.685 a.35.1.3 147605 2k9qA 77 9.208 1lliA 92 9.301 a.35.1.2 17025 2v9vA 135 9.494 a.4.5.35,a.4.5.35 152809,152810 2j5pA 76 9.620 a.4.5.67 138050 1x19A 359 9.659 2w57A 150 9.740 2ebyA 113 10.12 3cecA 104 10.18 2fu4A 83 10.45 1ri7A 171 10.78 a.4.5.32,d.58.4.2 97504,97505 1y7yA 74 11.14 a.35.1.3 122729 1y9qA 192 11.82 a.35.1.8,b.82.1.15 116592,116593 1tw3A 360 14.32 a.4.5.29,c.66.1.12 107373,107374 2rn7A 108 15.12 3i71A 68 15.26 1jboA 162 15.47 a.1.1.3 84150 3iwfA 107 15.52 3eyyA 145 15.65 1yg2A 179 15.90 a.4.5.61 116681 1tbxA 99 15.92 a.4.5.48 106748 3mkwB 138 16.12 2jvlA 107 16.41 1j9iA 68 16.46 a.6.1.5 71619 1qzzA 374 16.81 a.4.5.29,c.66.1.12 96719,96720 2cujA 108 17.60 a.4.1.18 130812 3ir1A 245 18.02 3mklA 120 18.06 1ufmA 84 18.15 a.4.5.47 107816 1xn7A 78 19.00 a.4.5.62 115576 2g9wA 138 19.65 a.4.5.39 147097 2fjrA 189 20.34 1wi9A 72 20.78 a.4.5.47 114663 1neqA 74 20.82 a.35.1.2 17063 3h7uA 335 21.13 2ip2A 334 22.21 2o3fA 111 22.38 a.4.1.20 148573 2ef8A 84 22.47 1mtpA 323 22.66 e.1.1.1 85107 2wzmA 283 22.88 2ve8A 73 23.08 a.4.5.67 153008 2eq8C 40 23.73 3mn2A 108 23.93 3f7jA 276 24.29 3cuqB 218 25.34 1z1dA 103 25.44 a.4.5.16 124351 1jkoC 52 25.59 a.4.1.2 66809 3buvA 326 25.81 3mkzA 121 26.17 3h7rA 331 27.57 2k9lA 76 30.19 2croA 71 30.80 a.35.1.2 17038 1ret 43 30.92 1gdtA 183 31.04 a.4.1.2,c.53.1.1 16021,33348 3ke2A 117 31.54 2jt1A 77 31.84 2nxcA 254 31.92 c.66.1.39 138739 1resA 43 32.49 a.4.1.2 16023 1jboB 172 32.84 a.1.1.3 84151 3i53A 332 33.26 1kn1A 160 35.37 a.1.1.3 77455 2bnmA 198 35.75 a.35.1.3,b.82.1.10 128835,128836 1hstA 90 36.34 a.4.5.13 16140 3b7hA 78 36.67 1lmb3 92 36.73 1xs5A 241 37.00 c.94.1.1 115912 3hhhA 116 37.60 3fmyA 73 38.22 1rp3A 239 40.18 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1kn1B 161 40.31 a.1.1.3 77456 1r69A 69 40.87 a.35.1.2 17028 3jw4A 148 41.27 1j75A 67 41.32 a.4.5.19 62673 3gpvA 148 42.38 1liaA 164 43.77 a.1.1.3 15661 1ktpA 162 43.95 a.1.1.3 72990 1u3eM 174 43.98 d.4.1.3,d.285.1.1 107640,107641 2fswA 107 45.28 a.4.5.69 134042 1p99A 295 45.31 c.94.1.1 94384 1phnA 162 47.22 a.1.1.3 15641 3bz6A 183 47.33 a.4.5.75,a.4.5.75 155739,155740 2fk8A 318 48.83 c.66.1.18 133648 2vxzA 165 49.42 1cpcA 162 50.37 a.1.1.3 15643 1i3jA 116 50.91 d.285.1.1 61594 3h4gA 325 51.65 2fjbA 643 51.98 3hugA 92 53.09 2dg6A 222 53.35 1l0oC 243 53.47 a.4.13.2 73405 2hztA 107 54.36 a.4.5.69 147462 1aisB 200 54.45 a.74.1.2,a.74.1.2 18384,18385 1ntcA 91 54.54 a.4.1.12 19004 1b8dA 164 55.29 a.1.1.3 15665 3mkyB 189 55.55 1stzA 338 56.33 a.4.5.51,d.110.2.3 106009,106010 2k9mA 130 56.52 1in4A 334 57.29 a.4.5.11,c.37.1.20 62597,62598 2h27A 73 57.72 a.4.13.2 135993 1q9jA 422 58.97 c.43.1.2,c.43.1.2 104590,104591 1qgwC 177 59.55 a.1.1.3 15673 2ppxA 99 60.05 a.35.1.3 149783 1fseA 74 60.39 a.4.6.2 60000 3cuqA 234 63.43 1atzA 189 64.28 c.62.1.1 34132 1r7jA 95 64.43 a.4.5.49 104836 1d3uB 201 66.12 a.74.1.2,a.74.1.2 18386,18387 2g9mA 133 66.27 1zljA 78 68.35 3lstA 348 68.58 2v8pA 271 70.09 3frwA 107 71.50 1vbjA 281 71.64 1p4wA 99 71.97 a.4.6.2 87783 1repC 251 72.47 a.4.5.10,a.4.5.10 16125,16126 3frkA 373 72.55 3fz4A 120 72.85 1kpgA 287 73.83 c.66.1.18 68735 1volA 204 73.94 a.74.1.2,a.74.1.2 18370,18371 1zelA 298 74.75 a.4.5.83,d.377.1.1 145994,145995 1hcrA 52 75.83 a.4.1.2 16020 1oyiA 82 77.55 a.4.5.19 93729 1rzsA 61 78.18 a.35.1.2 105139 1phnB 172 78.45 a.1.1.3 15642 2hejA 323 78.60 1ku3A 73 79.61 a.4.13.2 73000 2v7fA 150 81.01 a.4.5.84 152721 2pfuA 99 81.14 1cpcB 172 81.38 a.1.1.3 15644 2ebdA 309 81.92 3ea8A 306 82.09 2k02A 87 82.19 1zuaX 317 82.94 1whzA 70 84.88 d.50.3.2 114656 2ofyA 86 84.98 a.35.1.3 148762 2zmeA 258 85.35 1wj5A 120 85.73 a.4.5.59 114692 3df8A 111 86.76 3hemA 302 87.52 3kpiA 434 89.85