# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 1.19e-12 2wv0A 243 6.70e-11 2ek5A 129 1.68e-10 3edpA 236 2.06e-10 1hw1A 239 2.50e-10 a.4.5.6,a.78.1.1 16111,18441 3eetA 274 2.59e-10 3ic7A 126 3.26e-10 1e2xA 243 3.27e-10 a.4.5.6,a.78.1.1 16113,18443 2di3A 239 3.30e-10 3bwgA 239 4.69e-10 a.4.5.6,d.190.1.2 155693,155694 3f8mA 248 7.25e-09 2hs5A 239 8.12e-09 a.4.5.6,a.78.1.1 147379,147380 3c7jA 237 1.98e-08 3fmsA 209 2.94e-08 3ihuA 222 5.63e-08 1on2A 142 0.01950 a.4.5.24,a.76.1.1 87103,87104 2d1hA 109 0.04195 a.4.5.50 131125 3d0sA 227 0.07277 1b1bA 140 0.07630 a.4.5.24,a.76.1.1 16215,18421 2qq9A 226 0.08368 1ub9A 100 0.08468 a.4.5.28 99159 2dtr 226 0.08635 2hr3A 147 0.08815 a.4.5.28 136678 1fx7A 230 0.09580 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2h09A 155 0.09653 1f5tA 121 0.09866 a.4.5.24,a.76.1.1 16203,18409 1sfxA 109 0.1038 a.4.5.50 105505 3k0lA 162 0.1052 1bi0 226 0.1060 1c0wA 225 0.1113 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 3cdhA 155 0.1392 2zdbA 195 0.1434 2ethA 154 0.2038 a.4.5.28 132358 1y0uA 96 0.2047 a.4.5.5 116310 1zybA 232 0.2116 a.4.5.4,b.82.3.2 125815,125816 3gflA 146 0.2195 2ev0A 142 0.2364 a.4.5.24,a.76.1.1 132413,132414 2oqgA 114 0.2463 3f3xA 144 0.2646 1jgsA 138 0.2704 a.4.5.28 66683 2rdpA 150 0.2749 2gxgA 146 0.2768 1pdnC 128 0.2900 a.4.1.5 16047 3bddA 142 0.3158 2ia0A 171 0.3292 3ctaA 230 0.3324 a.4.5.28,b.43.5.2 156979,156980 2nyxA 168 0.3470 3ecoA 139 0.3559 3hsrA 140 0.3561 3f6vA 151 0.3564 3e97A 231 0.3570 1j5yA 187 0.3581 a.4.5.1,d.94.2.1 71592,71593 3fm5A 150 0.3648 1xd7A 145 0.3665 a.4.5.55 109566 1s3jA 155 0.3941 a.4.5.28 98437 2cohA 202 0.4080 a.4.5.4,b.82.3.2 130677,130678 2fbkA 181 0.4171 a.4.5.28 133247 3g3zA 145 0.4240 3gfjA 146 0.4272 3echA 142 0.4469 2nnnA 140 0.4526 1g6nA 210 0.4640 a.4.5.4,b.82.3.2 16100,28139 3gfmA 146 0.4900 2g7uA 257 0.5035 3jthA 98 0.5277 3gw2A 108 0.5327 2fbiA 142 0.5336 a.4.5.28 133246 3f6oA 118 0.5598 3fx3A 237 0.5639 2zcwA 202 0.5675 1lnwA 147 0.5879 a.4.5.28 78104 3dv8A 220 0.5916 2fbhA 146 0.5956 a.4.5.28 133245 1lj9A 144 0.6081 a.4.5.28 78035 1biaA 321 0.6103 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1p4xA 250 0.6137 a.4.5.28,a.4.5.28 87784,87785 2qwwA 154 0.6247 2frhA 127 0.6374 a.4.5.28 133988 2a61A 145 0.6562 a.4.5.28 126187 2bv6A 142 0.7118 a.4.5.28 146218 1ft9A 222 0.7130 a.4.5.4,b.82.3.1 16107,28131 3bj6A 152 0.7223 3bpvA 138 0.7473 3k69A 162 0.7661 3bjaA 139 0.8017 3e6mA 161 0.8191 2gauA 232 0.8276 a.4.5.4,b.82.3.2 134894,134895 3cjnA 162 0.8998 1i6xA 209 0.9021 a.4.5.4,b.82.3.2 83673,83674 3cuoA 99 0.9054 2pexA 153 0.9141 2h6bA 250 0.9531 a.4.5.4,b.82.3.2 147228,147229 2ia2A 265 0.9579 2o0yA 260 1.046 3e6cC 250 1.064 a.4.5.4,b.82.3.2 158038,158039 2qvoA 95 1.066 2b0lA 102 1.074 a.4.5.66 127641 3boqA 160 1.083 1smtA 122 1.177 a.4.5.5 16109 2hoeA 380 1.225 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1bia 321 1.249 3kfwX 247 1.258 1i1gA 141 1.306 a.4.5.32,d.58.4.2 65982,65983 2fa5A 162 1.363 3deuA 166 1.392 a.4.5.28 157600 2w25A 150 1.426 1lvaA 258 1.432 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1r1uA 106 1.438 a.4.5.5 104771 2fnaA 357 1.452 a.4.5.11,c.37.1.20 133809,133810 3lwfA 159 1.456 1mkmA 249 1.502 a.4.5.33,d.110.2.2 79242,79243 2dtrA 226 1.516 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2pn6A 150 1.525 2ivmA 150 1.576 1u2wA 122 1.606 a.4.5.5 119487 3e5xA 250 1.753 1r1tA 122 1.767 a.4.5.5 104769 1ulyA 192 1.816 a.4.5.58 113297 1okrA 123 1.818 a.4.5.39 93269 2h6cA 232 1.939 a.4.5.4,b.82.3.2 147232,147233 1hw5A 210 1.943 a.4.5.4,b.82.3.2 16098,28137 2pjpA 121 1.960 2e7xA 150 2.237 1z91A 147 2.315 a.4.5.28 124736 3broA 141 2.383 a.4.5.28 155517 3h3zA 235 2.387 2dbbA 151 2.614 2cgpA 210 2.914 a.4.5.4,b.82.3.2 16102,28141 3eqxA 373 3.227 2fmyA 220 3.266 3bp8A 406 3.838 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2bgcA 238 3.920 a.4.5.4,b.82.3.3 128458,128459 2cfxA 144 4.088 a.4.5.32,d.58.4.2 130395,130396 1lea 84 4.112 1jhgA 101 4.236 a.4.12.1 19009 2v79A 135 4.405 2p5vA 162 4.471 2dqlA 115 4.741 1trrA 107 4.834 a.4.12.1 19017 3f8bA 116 5.027 1wsuA 124 5.065 a.4.5.35,a.4.5.35 121245,121246 2qz8A 149 5.331 2cg4A 152 5.392 a.4.5.32,d.58.4.2 130417,130418 3l09A 266 5.548 1g2hA 61 5.892 a.4.1.12 60224 2e1nA 138 6.550 3i4pA 162 6.784 1sd4A 126 7.001 a.4.5.39 105428 1ylfA 149 7.119 a.4.5.55 123648 2fe3A 145 7.340 2fu4A 83 7.654 2b5aA 77 7.738 a.35.1.3 127882 1z6rA 406 7.921 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2w57A 150 8.037 1mzbA 136 8.743 a.4.5.42 91497 2qlzA 232 9.076 1ri7A 171 9.162 a.4.5.32,d.58.4.2 97504,97505 1yg2A 179 9.723 a.4.5.61 116681 1qbjA 81 9.893 a.4.5.19 16155 2cyyA 151 10.44 a.4.5.32,d.58.4.2 131028,131029 1jboA 162 10.51 a.1.1.3 84150 1jhfA 202 10.97 a.4.5.2,b.87.1.1 63057,63058 1utxA 66 11.61 a.35.1.3 108034 3bs3A 76 12.06 2r1jL 68 12.33 a.35.1.2 151525 3h7uA 335 13.20 2p8tA 200 13.46 a.4.5.72,d.74.4.2 149315,149316 2cro 71 15.33 2ictA 94 15.82 a.35.1.3 147605 3go5A 285 16.45 2f2eA 146 16.60 a.4.5.69 132808 3majA 382 16.79 1r69 69 17.72 2g9wA 138 17.95 a.4.5.39 147097 1ret 43 19.05 1y7yA 74 19.31 a.35.1.3 122729 6paxA 133 19.58 a.4.1.5,a.4.1.5 64758,64759 1b4aA 149 19.86 a.4.5.3,d.74.2.1 16088,39721 2ebyA 113 19.93 3dp7A 363 20.32 3lmmA 583 20.39 2zkzA 99 20.99 3h7rA 331 21.58 2obpA 96 21.65 a.4.5.71 148718 1z1dA 103 22.02 a.4.5.16 124351 1b0nA 111 22.25 a.34.1.1,a.35.1.3 17001,17064 1adrA 76 22.49 a.35.1.2 17042 1tbxA 99 22.58 a.4.5.48 106748 3hhhA 116 22.72 3eyyA 145 23.06 1kn1B 161 23.41 a.1.1.3 77456 2k9qA 77 23.94 3f7jA 276 24.10 3iwfA 107 25.42 1y9qA 192 26.11 a.35.1.8,b.82.1.15 116592,116593 1q1hA 110 26.12 a.4.5.41 95580 3mkwB 138 26.53 3cecA 104 26.65 3jw4A 148 27.25 3bz6A 183 28.25 a.4.5.75,a.4.5.75 155739,155740 2wzmA 283 28.47 1jboB 172 28.69 a.1.1.3 84151 3ir1A 245 29.32 1qgpA 77 29.65 a.4.5.19 16158 1ktpA 162 29.67 a.1.1.3 72990 2v9vA 135 31.00 a.4.5.35,a.4.5.35 152809,152810 2jvlA 107 31.62 1resA 43 32.61 a.4.1.2 16023 1rp3A 239 32.79 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1mtpA 323 32.83 e.1.1.1 85107 3mkzA 121 33.34 1k78A 149 33.47 a.4.1.5,a.4.1.5 68255,68256 2ip2A 334 33.67 1liaA 164 33.85 a.1.1.3 15661 1kn1A 160 34.26 a.1.1.3 77455 3irrA 67 34.92 2r3sA 335 35.13 2eq8C 40 35.58 1cpcA 162 35.82 a.1.1.3 15643 3gwzA 369 36.03 1stzA 338 38.13 a.4.5.51,d.110.2.3 106009,106010 1lliA 92 38.47 a.35.1.2 17025 3i71A 68 38.81 2rn7A 108 39.65 1phnA 162 41.59 a.1.1.3 15641 1b8dA 164 42.69 a.1.1.3 15665 1rcsA 105 42.69 a.4.12.1 19025 1xs5A 241 45.70 c.94.1.1 115912 2fjrA 189 46.09 3buvA 326 46.30 1xmaA 145 46.80 a.4.5.61 115477 2fx0A 201 48.30 a.4.1.9,a.121.1.1 134269,134270 3cuqB 218 50.87 3mklA 120 50.93 3h4gA 325 53.10 1hstA 90 53.81 a.4.5.13 16140 1qzzA 374 55.39 a.4.5.29,c.66.1.12 96719,96720 2jt1A 77 56.57 1phnB 172 59.40 a.1.1.3 15642 1zx4A 192 59.97 1p99A 295 60.15 c.94.1.1 94384 3fmyA 73 60.65 3mkyB 189 60.70 3frkA 373 61.60 1l5aA 436 62.28 c.43.1.2,c.43.1.2 75923,75924 2k9lA 76 62.76 2o3fA 111 63.18 a.4.1.20 148573 2fjbA 643 63.41 2fk8A 318 63.95 c.66.1.18 133648 1g57A 217 64.68 d.115.1.2 60253 2hztA 107 64.80 a.4.5.69 147462 1qgwC 177 65.09 a.1.1.3 15673 2zivB 351 66.63 1hkqA 132 69.68 a.4.5.10 83555 2gqqA 163 70.21 2ef8A 84 71.62 2fswA 107 73.42 a.4.5.69 134042 2g2cA 167 78.20 c.57.1.1 134535 1cpcB 172 78.33 a.1.1.3 15644 2q24A 194 78.76 1c7nA 399 79.54 c.67.1.3 34413 2v7fA 150 79.70 a.4.5.84 152721 2jj7A 186 83.97 1oyiA 82 84.93 a.4.5.19 93729 3i0yA 140 85.01 1j9iA 68 87.51 a.6.1.5 71619 1wi9A 72 87.80 a.4.5.47 114663 1allA 160 88.08 a.1.1.3 15647 2wi9A 436 88.84 2o7tA 199 88.98 a.4.1.9,a.121.1.1 148670,148671