# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 5.94e-13 2wv0A 243 3.49e-11 2ek5A 129 9.11e-11 3eetA 274 1.21e-10 3edpA 236 1.29e-10 1hw1A 239 1.59e-10 a.4.5.6,a.78.1.1 16111,18441 2di3A 239 1.66e-10 1e2xA 243 1.67e-10 a.4.5.6,a.78.1.1 16113,18443 3ic7A 126 2.65e-10 3bwgA 239 3.15e-10 a.4.5.6,d.190.1.2 155693,155694 3f8mA 248 4.74e-09 2hs5A 239 5.07e-09 a.4.5.6,a.78.1.1 147379,147380 3c7jA 237 1.21e-08 3fmsA 209 1.70e-08 3ihuA 222 3.78e-08 1on2A 142 0.02295 a.4.5.24,a.76.1.1 87103,87104 2d1hA 109 0.04039 a.4.5.50 131125 1b1bA 140 0.04980 a.4.5.24,a.76.1.1 16215,18421 2dtr 226 0.06973 1ub9A 100 0.06998 a.4.5.28 99159 2qq9A 226 0.07123 1c0wA 225 0.07644 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1sfxA 109 0.07820 a.4.5.50 105505 2hr3A 147 0.08154 a.4.5.28 136678 3d0sA 227 0.08596 2h09A 155 0.08681 1f5tA 121 0.08798 a.4.5.24,a.76.1.1 16203,18409 1fx7A 230 0.09747 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 3k0lA 162 0.09899 1bi0 226 0.1026 3cdhA 155 0.1343 2zdbA 195 0.1386 2ev0A 142 0.1843 a.4.5.24,a.76.1.1 132413,132414 1y0uA 96 0.1953 a.4.5.5 116310 1pdnC 128 0.2293 a.4.1.5 16047 1zybA 232 0.2398 a.4.5.4,b.82.3.2 125815,125816 2rdpA 150 0.2478 2oqgA 114 0.2480 2nyxA 168 0.2623 3gflA 146 0.2704 3bddA 142 0.2775 2ethA 154 0.2859 a.4.5.28 132358 2gxgA 146 0.2951 3f3xA 144 0.2969 3fm5A 150 0.2997 2ia0A 171 0.3210 1jgsA 138 0.3336 a.4.5.28 66683 3ecoA 139 0.3453 3f6oA 118 0.3510 3hsrA 140 0.3549 1j5yA 187 0.3612 a.4.5.1,d.94.2.1 71592,71593 1g6nA 210 0.3696 a.4.5.4,b.82.3.2 16100,28139 3f6vA 151 0.3754 1s3jA 155 0.3883 a.4.5.28 98437 3e97A 231 0.3905 2fbkA 181 0.3937 a.4.5.28 133247 2g7uA 257 0.4040 3ctaA 230 0.4285 a.4.5.28,b.43.5.2 156979,156980 1xd7A 145 0.4405 a.4.5.55 109566 2nnnA 140 0.4561 3gw2A 108 0.4758 2frhA 127 0.4857 a.4.5.28 133988 3echA 142 0.5011 3gfjA 146 0.5140 2qwwA 154 0.5308 3g3zA 145 0.5362 1lnwA 147 0.5462 a.4.5.28 78104 1lj9A 144 0.5542 a.4.5.28 78035 3jthA 98 0.5586 2fbhA 146 0.5622 a.4.5.28 133245 2cohA 202 0.5641 a.4.5.4,b.82.3.2 130677,130678 1p4xA 250 0.5721 a.4.5.28,a.4.5.28 87784,87785 3fx3A 237 0.5745 3bjaA 139 0.5786 2fbiA 142 0.5981 a.4.5.28 133246 3gfmA 146 0.6223 3cjnA 162 0.7067 3k69A 162 0.7072 1biaA 321 0.7161 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2bv6A 142 0.7178 a.4.5.28 146218 3cuoA 99 0.7363 3boqA 160 0.7424 2zcwA 202 0.7589 3bj6A 152 0.7721 2a61A 145 0.7733 a.4.5.28 126187 2ia2A 265 0.7814 3dv8A 220 0.7827 3bpvA 138 0.8317 1i6xA 209 0.8577 a.4.5.4,b.82.3.2 83673,83674 3e6mA 161 0.8935 2o0yA 260 0.8961 2qvoA 95 0.9364 3e6cC 250 0.9422 a.4.5.4,b.82.3.2 158038,158039 2gauA 232 0.9457 a.4.5.4,b.82.3.2 134894,134895 1ft9A 222 0.9557 a.4.5.4,b.82.3.1 16107,28131 1i1gA 141 0.9619 a.4.5.32,d.58.4.2 65982,65983 2pexA 153 0.9930 2fa5A 162 1.036 2b0lA 102 1.121 a.4.5.66 127641 2hoeA 380 1.242 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1smtA 122 1.246 a.4.5.5 16109 2dtrA 226 1.250 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2h6bA 250 1.286 a.4.5.4,b.82.3.2 147228,147229 2pn6A 150 1.367 1bia 321 1.389 2w25A 150 1.393 3kfwX 247 1.403 3deuA 166 1.458 a.4.5.28 157600 1r1uA 106 1.480 a.4.5.5 104771 2ivmA 150 1.521 1r1tA 122 1.577 a.4.5.5 104769 1okrA 123 1.668 a.4.5.39 93269 1lvaA 258 1.672 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2pjpA 121 1.675 3lwfA 159 1.714 1u2wA 122 1.724 a.4.5.5 119487 1mkmA 249 1.748 a.4.5.33,d.110.2.2 79242,79243 2fnaA 357 1.892 a.4.5.11,c.37.1.20 133809,133810 2dbbA 151 2.013 3e5xA 250 2.056 1hw5A 210 2.058 a.4.5.4,b.82.3.2 16098,28137 2e7xA 150 2.073 1z91A 147 2.086 a.4.5.28 124736 1ulyA 192 2.111 a.4.5.58 113297 2h6cA 232 2.124 a.4.5.4,b.82.3.2 147232,147233 3h3zA 235 2.194 3broA 141 2.868 a.4.5.28 155517 2cfxA 144 3.007 a.4.5.32,d.58.4.2 130395,130396 2v79A 135 3.604 1lea 84 3.609 2cgpA 210 3.734 a.4.5.4,b.82.3.2 16102,28141 2bgcA 238 3.765 a.4.5.4,b.82.3.3 128458,128459 3eqxA 373 3.770 3bp8A 406 3.819 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2cg4A 152 3.885 a.4.5.32,d.58.4.2 130417,130418 2p5vA 162 4.072 2fmyA 220 4.115 1jhgA 101 4.245 a.4.12.1 19009 2qz8A 149 4.507 1trrA 107 4.514 a.4.12.1 19017 3l09A 266 4.822 1g2hA 61 5.158 a.4.1.12 60224 3i4pA 162 5.193 2fu4A 83 5.653 1wsuA 124 5.669 a.4.5.35,a.4.5.35 121245,121246 1z6rA 406 5.696 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3f8bA 116 6.032 2e1nA 138 6.200 2b5aA 77 6.490 a.35.1.3 127882 2dqlA 115 6.571 1mzbA 136 6.692 a.4.5.42 91497 2fe3A 145 7.133 2w57A 150 7.178 1ri7A 171 7.217 a.4.5.32,d.58.4.2 97504,97505 2cyyA 151 7.830 a.4.5.32,d.58.4.2 131028,131029 1sd4A 126 7.956 a.4.5.39 105428 1jboA 162 8.167 a.1.1.3 84150 2qlzA 232 9.058 1yg2A 179 9.461 a.4.5.61 116681 3h7uA 335 9.597 1ylfA 149 9.677 a.4.5.55 123648 2p8tA 200 10.21 a.4.5.72,d.74.4.2 149315,149316 2r1jL 68 10.53 a.35.1.2 151525 1utxA 66 10.80 a.35.1.3 108034 1jhfA 202 11.78 a.4.5.2,b.87.1.1 63057,63058 1qbjA 81 12.06 a.4.5.19 16155 2cro 71 12.40 3lmmA 583 13.31 6paxA 133 14.04 a.4.1.5,a.4.1.5 64758,64759 3bs3A 76 14.53 1r69 69 14.59 3h7rA 331 15.58 2ictA 94 15.66 a.35.1.3 147605 3eyyA 145 16.09 1ret 43 16.10 2zkzA 99 16.14 2ebyA 113 16.63 3dp7A 363 16.67 1adrA 76 18.20 a.35.1.2 17042 2f2eA 146 18.66 a.4.5.69 132808 1y7yA 74 18.84 a.35.1.3 122729 1q1hA 110 19.27 a.4.5.41 95580 1b4aA 149 19.46 a.4.5.3,d.74.2.1 16088,39721 2g9wA 138 19.94 a.4.5.39 147097 3go5A 285 20.06 3majA 382 20.55 1z1dA 103 20.95 a.4.5.16 124351 1ktpA 162 21.04 a.1.1.3 72990 2k9qA 77 21.37 1b0nA 111 21.43 a.34.1.1,a.35.1.3 17001,17064 1qgpA 77 21.53 a.4.5.19 16158 3iwfA 107 22.58 3cecA 104 22.88 1rp3A 239 23.04 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1y9qA 192 23.22 a.35.1.8,b.82.1.15 116592,116593 1kn1B 161 23.36 a.1.1.3 77456 2wzmA 283 24.21 1cpcA 162 24.47 a.1.1.3 15643 2obpA 96 24.58 a.4.5.71 148718 3mkwB 138 25.58 2jvlA 107 25.60 1mtpA 323 26.07 e.1.1.1 85107 3f7jA 276 26.49 1jboB 172 27.11 a.1.1.3 84151 1stzA 338 27.86 a.4.5.51,d.110.2.3 106009,106010 1kn1A 160 28.16 a.1.1.3 77455 2r3sA 335 28.88 2eq8C 40 29.20 1liaA 164 29.37 a.1.1.3 15661 1tbxA 99 30.22 a.4.5.48 106748 1k78A 149 30.59 a.4.1.5,a.4.1.5 68255,68256 3hhhA 116 30.75 2v9vA 135 30.89 a.4.5.35,a.4.5.35 152809,152810 1phnA 162 31.21 a.1.1.3 15641 3bz6A 183 31.95 a.4.5.75,a.4.5.75 155739,155740 3mkzA 121 32.90 3irrA 67 33.99 3jw4A 148 34.97 3ir1A 245 35.89 2rn7A 108 35.94 1b8dA 164 38.29 a.1.1.3 15665 2ip2A 334 39.39 1resA 43 39.84 a.4.1.2 16023 3buvA 326 40.50 1l5aA 436 41.45 c.43.1.2,c.43.1.2 75923,75924 1hstA 90 43.39 a.4.5.13 16140 3mklA 120 45.29 3i71A 68 46.94 3gwzA 369 47.19 2k9lA 76 48.11 3h4gA 325 48.31 2fjrA 189 49.16 1lliA 92 50.13 a.35.1.2 17025 1rcsA 105 50.60 a.4.12.1 19025 2zivB 351 50.81 2gqqA 163 50.95 1xs5A 241 50.98 c.94.1.1 115912 1phnB 172 51.68 a.1.1.3 15642 3i0yA 140 53.06 3fmyA 73 53.52 1zx4A 192 54.20 3frkA 373 54.44 1c7nA 399 55.09 c.67.1.3 34413 2fx0A 201 55.17 a.4.1.9,a.121.1.1 134269,134270 2o3fA 111 55.23 a.4.1.20 148573 3mkyB 189 57.28 3cuqB 218 59.69 1qgwC 177 60.31 a.1.1.3 15673 2wi9A 436 60.55 2fk8A 318 61.60 c.66.1.18 133648 1xmaA 145 62.53 a.4.5.61 115477 1hkqA 132 63.12 a.4.5.10 83555 2ef8A 84 64.33 1qzzA 374 65.81 a.4.5.29,c.66.1.12 96719,96720 2jt1A 77 68.78 1x19A 359 68.82 1p99A 295 69.74 c.94.1.1 94384 1g57A 217 69.87 d.115.1.2 60253 1cpcB 172 70.29 a.1.1.3 15644 1allA 160 72.12 a.1.1.3 15647 2fjbA 643 73.13 1oyiA 82 75.85 a.4.5.19 93729 2bnmA 198 76.64 a.35.1.3,b.82.1.10 128835,128836 1tw3A 360 77.94 a.4.5.29,c.66.1.12 107373,107374 1j9iA 68 78.70 a.6.1.5 71619 1wi9A 72 80.39 a.4.5.47 114663 1xvqA 175 80.58 c.47.1.10 116094 2h27A 73 81.13 a.4.13.2 135993 2croA 71 81.46 a.35.1.2 17038 3mn2A 108 82.29 2zhgA 154 87.40 2fswA 107 87.59 a.4.5.69 134042 1gdtA 183 87.99 a.4.1.2,c.53.1.1 16021,33348 1r69A 69 88.52 a.35.1.2 17028