# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 1.23e-12 3ic7A 126 1.64e-10 2ek5A 129 1.70e-10 2wv0A 243 1.89e-10 2di3A 239 5.32e-10 3eetA 274 5.68e-10 1e2xA 243 6.38e-10 a.4.5.6,a.78.1.1 16113,18443 1hw1A 239 6.97e-10 a.4.5.6,a.78.1.1 16111,18441 3edpA 236 7.68e-10 3bwgA 239 1.24e-09 a.4.5.6,d.190.1.2 155693,155694 2hs5A 239 2.06e-08 a.4.5.6,a.78.1.1 147379,147380 3c7jA 237 2.98e-08 3fmsA 209 6.10e-08 3f8mA 248 1.03e-07 3ihuA 222 1.52e-07 2d1hA 109 0.05869 a.4.5.50 131125 1on2A 142 0.06688 a.4.5.24,a.76.1.1 87103,87104 1b1bA 140 0.1083 a.4.5.24,a.76.1.1 16215,18421 2h09A 155 0.1101 2hr3A 147 0.1116 a.4.5.28 136678 1sfxA 109 0.1212 a.4.5.50 105505 3k0lA 162 0.1226 2fbkA 181 0.1742 a.4.5.28 133247 2oqgA 114 0.1789 1bi0 226 0.1816 2dtr 226 0.1977 2qq9A 226 0.2011 1f5tA 121 0.2016 a.4.5.24,a.76.1.1 16203,18409 3cdhA 155 0.2349 1c0wA 225 0.2600 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 3f3xA 144 0.2874 1fx7A 230 0.3533 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1y0uA 96 0.3573 a.4.5.5 116310 2ev0A 142 0.3620 a.4.5.24,a.76.1.1 132413,132414 2nyxA 168 0.3761 3f6oA 118 0.3800 1xd7A 145 0.3876 a.4.5.55 109566 2nnnA 140 0.4472 3gflA 146 0.4634 3f6vA 151 0.4746 3ctaA 230 0.4751 a.4.5.28,b.43.5.2 156979,156980 2dtrA 226 0.4839 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1s3jA 155 0.5028 a.4.5.28 98437 3d0sA 227 0.5036 2ethA 154 0.5117 a.4.5.28 132358 2gxgA 146 0.5293 1zybA 232 0.5318 a.4.5.4,b.82.3.2 125815,125816 3echA 142 0.5376 3gw2A 108 0.5528 2g7uA 257 0.5582 2rdpA 150 0.5627 2fbiA 142 0.5729 a.4.5.28 133246 1smtA 122 0.5786 a.4.5.5 16109 3k69A 162 0.5913 2bv6A 142 0.6073 a.4.5.28 146218 3ecoA 139 0.6297 1ub9A 100 0.6299 a.4.5.28 99159 1r1uA 106 0.6403 a.4.5.5 104771 3g3zA 145 0.6578 3jthA 98 0.6707 2qwwA 154 0.7002 2zdbA 195 0.7330 3boqA 160 0.7509 3bpvA 138 0.7595 1jgsA 138 0.7693 a.4.5.28 66683 2ia2A 265 0.7911 3lwfA 159 0.8074 3e6mA 161 0.8202 2fbhA 146 0.8564 a.4.5.28 133245 1r1tA 122 0.8792 a.4.5.5 104769 1biaA 321 0.8862 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2ia0A 171 0.9236 3gfmA 146 0.9525 3cjnA 162 0.9784 3bddA 142 1.001 3gfjA 146 1.028 3hsrA 140 1.049 2pexA 153 1.154 3cuoA 99 1.172 1lnwA 147 1.235 a.4.5.28 78104 2b0lA 102 1.243 a.4.5.66 127641 1u2wA 122 1.243 a.4.5.5 119487 3bj6A 152 1.273 2a61A 145 1.277 a.4.5.28 126187 1j5yA 187 1.310 a.4.5.1,d.94.2.1 71592,71593 1ulyA 192 1.383 a.4.5.58 113297 2fa5A 162 1.457 3bjaA 139 1.567 1lj9A 144 1.616 a.4.5.28 78035 2qvoA 95 1.853 1pdnC 128 1.917 a.4.1.5 16047 1g6nA 210 2.050 a.4.5.4,b.82.3.2 16100,28139 3fm5A 150 2.061 2hoeA 380 2.088 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2frhA 127 2.131 a.4.5.28 133988 3e5xA 250 2.145 2v79A 135 2.236 2o0yA 260 2.343 2w25A 150 2.344 2fnaA 357 2.355 a.4.5.11,c.37.1.20 133809,133810 2ivmA 150 2.394 1i1gA 141 2.502 a.4.5.32,d.58.4.2 65982,65983 2fmyA 220 2.621 3deuA 166 2.721 a.4.5.28 157600 3dv8A 220 2.793 1p4xA 250 3.000 a.4.5.28,a.4.5.28 87784,87785 2dqlA 115 3.021 1bia 321 3.034 2qlzA 232 3.081 2gauA 232 3.083 a.4.5.4,b.82.3.2 134894,134895 1z91A 147 3.177 a.4.5.28 124736 1ft9A 222 3.660 a.4.5.4,b.82.3.1 16107,28131 2pn6A 150 3.713 1okrA 123 3.723 a.4.5.39 93269 2h6bA 250 3.832 a.4.5.4,b.82.3.2 147228,147229 2e1nA 138 3.940 2h6cA 232 4.516 a.4.5.4,b.82.3.2 147232,147233 3e97A 231 4.536 1trrA 107 4.688 a.4.12.1 19017 2dbbA 151 4.802 3kfwX 247 4.887 2e7xA 150 4.941 1z6rA 406 4.942 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1hw5A 210 5.236 a.4.5.4,b.82.3.2 16098,28137 1jhgA 101 5.352 a.4.12.1 19009 1lea 84 5.362 2qz8A 149 5.535 1i6xA 209 5.582 a.4.5.4,b.82.3.2 83673,83674 1mkmA 249 5.647 a.4.5.33,d.110.2.2 79242,79243 2bgcA 238 6.029 a.4.5.4,b.82.3.3 128458,128459 1g2hA 61 6.082 a.4.1.12 60224 2cohA 202 6.466 a.4.5.4,b.82.3.2 130677,130678 3broA 141 6.904 a.4.5.28 155517 2cfxA 144 6.966 a.4.5.32,d.58.4.2 130395,130396 2w57A 150 7.608 3e6cC 250 7.964 a.4.5.4,b.82.3.2 158038,158039 2cyyA 151 7.998 a.4.5.32,d.58.4.2 131028,131029 1mzbA 136 8.018 a.4.5.42 91497 1b4aA 149 8.349 a.4.5.3,d.74.2.1 16088,39721 2pjpA 121 8.809 3f8bA 116 8.890 2cgpA 210 9.125 a.4.5.4,b.82.3.2 16102,28141 3fx3A 237 9.171 1tbxA 99 9.221 a.4.5.48 106748 3go5A 285 9.720 2fe3A 145 9.746 2obpA 96 10.13 a.4.5.71 148718 1ri7A 171 10.27 a.4.5.32,d.58.4.2 97504,97505 2p5vA 162 10.65 3eyyA 145 10.84 1wsuA 124 11.44 a.4.5.35,a.4.5.35 121245,121246 1sd4A 126 11.50 a.4.5.39 105428 2zcwA 202 11.52 3bp8A 406 11.55 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2fu4A 83 11.60 2cg4A 152 11.81 a.4.5.32,d.58.4.2 130417,130418 1jhfA 202 12.38 a.4.5.2,b.87.1.1 63057,63058 3i4pA 162 12.43 1rcsA 105 13.00 a.4.12.1 19025 3dp7A 363 13.54 1y9qA 192 15.75 a.35.1.8,b.82.1.15 116592,116593 1jboA 162 16.21 a.1.1.3 84150 1ret 43 16.52 1yg2A 179 16.72 a.4.5.61 116681 2p8tA 200 17.11 a.4.5.72,d.74.4.2 149315,149316 3l09A 266 17.22 2r3sA 335 18.06 2b5aA 77 18.26 a.35.1.3 127882 1qbjA 81 18.30 a.4.5.19 16155 2zkzA 99 18.69 1z1dA 103 19.31 a.4.5.16 124351 1q1hA 110 20.83 a.4.5.41 95580 1y7yA 74 20.84 a.35.1.3 122729 1adrA 76 21.47 a.35.1.2 17042 2cro 71 22.08 3eqxA 373 22.51 1resA 43 22.67 a.4.1.2 16023 1lvaA 258 23.21 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2f2eA 146 23.28 a.4.5.69 132808 2r1jL 68 24.18 a.35.1.2 151525 1b0nA 111 24.24 a.34.1.1,a.35.1.3 17001,17064 1jboB 172 25.35 a.1.1.3 84151 3lmmA 583 25.84 2ictA 94 26.10 a.35.1.3 147605 2w31A 162 26.72 2zhgA 154 27.27 1utxA 66 30.95 a.35.1.3 108034 1r69 69 31.11 3cecA 104 31.60 1j9iA 68 31.77 a.6.1.5 71619 3gwzA 369 32.61 2gqqA 163 32.97 3bs3A 76 33.40 2ebyA 113 33.49 2k9lA 76 34.50 2rn7A 108 39.02 1kn1B 161 40.41 a.1.1.3 77456 2eq8C 40 41.02 2k9qA 77 42.24 2g9wA 138 42.48 a.4.5.39 147097 2qtwA 124 44.36 2ip2A 334 48.48 1qgwC 177 49.57 a.1.1.3 15673 1x19A 359 50.75 3mklA 120 50.88 1tw3A 360 50.95 a.4.5.29,c.66.1.12 107373,107374 2jvlA 107 50.95 3hhhA 116 51.57 1qgpA 77 51.65 a.4.5.19 16158 3fmyA 73 52.24 3jw4A 148 57.19 3bz6A 183 58.72 a.4.5.75,a.4.5.75 155739,155740 2hztA 107 60.24 a.4.5.69 147462 2v9vA 135 61.03 a.4.5.35,a.4.5.35 152809,152810 1kn1A 160 61.48 a.1.1.3 77455 2ef8A 84 62.12 3i71A 68 63.95 1z3eA 132 64.05 c.47.1.12 124400 3fz4A 120 65.32 1ylfA 149 65.33 a.4.5.55 123648 3lstA 348 66.68 1wj5A 120 68.48 a.4.5.59 114692 3m1rA 322 68.81 2fswA 107 70.08 a.4.5.69 134042 1aisB 200 75.09 a.74.1.2,a.74.1.2 18384,18385 2f22A 144 77.20 a.213.1.2 132795 1t6sA 162 77.80 a.4.5.60,a.4.5.60 112271,112272 2bnmA 198 78.89 a.35.1.3,b.82.1.10 128835,128836 1qzzA 374 79.13 a.4.5.29,c.66.1.12 96719,96720 1dpuA 99 81.17 a.4.5.16 16150 2zivB 351 82.53 1gdtA 183 84.43 a.4.1.2,c.53.1.1 16021,33348 2j9lA 185 89.65 d.37.1.1 147943 1h3qA 140 89.82 d.110.4.3 76652