# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 3.54e-15 2wv0A 243 4.99e-13 2ek5A 129 1.42e-12 3edpA 236 1.74e-12 1hw1A 239 3.14e-12 a.4.5.6,a.78.1.1 16111,18441 3ic7A 126 3.21e-12 3eetA 274 3.39e-12 1e2xA 243 3.80e-12 a.4.5.6,a.78.1.1 16113,18443 2di3A 239 4.09e-12 3bwgA 239 9.14e-12 a.4.5.6,d.190.1.2 155693,155694 3f8mA 248 1.62e-10 2hs5A 239 2.08e-10 a.4.5.6,a.78.1.1 147379,147380 3c7jA 237 7.84e-10 3fmsA 209 1.05e-09 3ihuA 222 1.45e-09 1on2A 142 0.005665 a.4.5.24,a.76.1.1 87103,87104 1b1bA 140 0.01871 a.4.5.24,a.76.1.1 16215,18421 2d1hA 109 0.02112 a.4.5.50 131125 1c0wA 225 0.02594 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2dtr 226 0.02598 2qq9A 226 0.02827 1fx7A 230 0.02882 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2h09A 155 0.03402 2hr3A 147 0.03434 a.4.5.28 136678 1bi0 226 0.03445 1f5tA 121 0.04024 a.4.5.24,a.76.1.1 16203,18409 1sfxA 109 0.05375 a.4.5.50 105505 3d0sA 227 0.05802 3cdhA 155 0.05913 1ub9A 100 0.06103 a.4.5.28 99159 2zdbA 195 0.06449 2ev0A 142 0.06720 a.4.5.24,a.76.1.1 132413,132414 3ctaA 230 0.08152 a.4.5.28,b.43.5.2 156979,156980 2oqgA 114 0.08640 1y0uA 96 0.08813 a.4.5.5 116310 1zybA 232 0.1061 a.4.5.4,b.82.3.2 125815,125816 1j5yA 187 0.1223 a.4.5.1,d.94.2.1 71592,71593 3k0lA 162 0.1408 2ia0A 171 0.1707 3gw2A 108 0.1733 3f3xA 144 0.1736 3gflA 146 0.1762 2ethA 154 0.1785 a.4.5.28 132358 2g7uA 257 0.2026 2gxgA 146 0.2087 3bddA 142 0.2142 3f6vA 151 0.2181 3ecoA 139 0.2220 3hsrA 140 0.2230 3f6oA 118 0.2320 2nyxA 168 0.2409 3g3zA 145 0.2415 1s3jA 155 0.2490 a.4.5.28 98437 2rdpA 150 0.2524 1jgsA 138 0.2541 a.4.5.28 66683 1ft9A 222 0.2550 a.4.5.4,b.82.3.1 16107,28131 1biaA 321 0.2603 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 3k69A 162 0.2684 1pdnC 128 0.2814 a.4.1.5 16047 1g6nA 210 0.2924 a.4.5.4,b.82.3.2 16100,28139 2cohA 202 0.2925 a.4.5.4,b.82.3.2 130677,130678 3echA 142 0.2934 2gauA 232 0.3043 a.4.5.4,b.82.3.2 134894,134895 1lj9A 144 0.3076 a.4.5.28 78035 2nnnA 140 0.3089 2ia2A 265 0.3209 2fbkA 181 0.3355 a.4.5.28 133247 1smtA 122 0.3440 a.4.5.5 16109 3boqA 160 0.3490 3cuoA 99 0.3623 3gfjA 146 0.3665 3e97A 231 0.3879 2qwwA 154 0.3946 2fbiA 142 0.4005 a.4.5.28 133246 2fbhA 146 0.4013 a.4.5.28 133245 1xd7A 145 0.4177 a.4.5.55 109566 3gfmA 146 0.4242 2pexA 153 0.4323 3dv8A 220 0.4364 2zcwA 202 0.4485 2fa5A 162 0.4574 2fnaA 357 0.4637 a.4.5.11,c.37.1.20 133809,133810 3bpvA 138 0.4919 3e6mA 161 0.5157 3fm5A 150 0.5157 1r1tA 122 0.5327 a.4.5.5 104769 3bjaA 139 0.5333 2dtrA 226 0.5592 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1r1uA 106 0.5726 a.4.5.5 104771 1i6xA 209 0.5737 a.4.5.4,b.82.3.2 83673,83674 3jthA 98 0.5753 1bia 321 0.6048 2a61A 145 0.6179 a.4.5.28 126187 1lnwA 147 0.6449 a.4.5.28 78104 2bv6A 142 0.6570 a.4.5.28 146218 2b0lA 102 0.6613 a.4.5.66 127641 2frhA 127 0.6835 a.4.5.28 133988 1okrA 123 0.6927 a.4.5.39 93269 3bj6A 152 0.7031 2o0yA 260 0.7066 1lvaA 258 0.7099 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1u2wA 122 0.7293 a.4.5.5 119487 3e6cC 250 0.7568 a.4.5.4,b.82.3.2 158038,158039 1p4xA 250 0.8243 a.4.5.28,a.4.5.28 87784,87785 3cjnA 162 0.8531 1mkmA 249 0.8585 a.4.5.33,d.110.2.2 79242,79243 2fmyA 220 0.9139 2h6bA 250 0.9345 a.4.5.4,b.82.3.2 147228,147229 3lwfA 159 0.9442 2h6cA 232 0.9589 a.4.5.4,b.82.3.2 147232,147233 1lea 84 1.016 3deuA 166 1.048 a.4.5.28 157600 1z91A 147 1.052 a.4.5.28 124736 2w25A 150 1.101 3kfwX 247 1.112 3e5xA 250 1.120 1i1gA 141 1.135 a.4.5.32,d.58.4.2 65982,65983 2pn6A 150 1.153 2ivmA 150 1.181 1ulyA 192 1.311 a.4.5.58 113297 3fx3A 237 1.381 2bgcA 238 1.395 a.4.5.4,b.82.3.3 128458,128459 2hoeA 380 1.403 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2dbbA 151 1.423 1hw5A 210 1.501 a.4.5.4,b.82.3.2 16098,28137 2e7xA 150 1.594 2qvoA 95 1.632 2qz8A 149 1.642 2pjpA 121 1.672 2cgpA 210 1.774 a.4.5.4,b.82.3.2 16102,28141 3bp8A 406 2.525 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2cfxA 144 2.762 a.4.5.32,d.58.4.2 130395,130396 3broA 141 2.793 a.4.5.28 155517 2v79A 135 2.885 1trrA 107 3.054 a.4.12.1 19017 3h3zA 235 3.220 2cg4A 152 3.412 a.4.5.32,d.58.4.2 130417,130418 1sd4A 126 3.557 a.4.5.39 105428 1g2hA 61 3.630 a.4.1.12 60224 1z6rA 406 3.632 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1wsuA 124 3.732 a.4.5.35,a.4.5.35 121245,121246 1jhgA 101 3.957 a.4.12.1 19009 2dqlA 115 3.979 2e1nA 138 4.272 3l09A 266 4.910 2qlzA 232 5.202 3i4pA 162 5.530 1jhfA 202 5.531 a.4.5.2,b.87.1.1 63057,63058 3go5A 285 5.637 2zkzA 99 6.413 3eqxA 373 6.489 2fe3A 145 6.732 3f8bA 116 6.835 1qbjA 81 7.409 a.4.5.19 16155 2p8tA 200 7.800 a.4.5.72,d.74.4.2 149315,149316 1yg2A 179 7.866 a.4.5.61 116681 2p5vA 162 8.273 3lmmA 583 8.350 1utxA 66 8.460 a.35.1.3 108034 2b5aA 77 8.735 a.35.1.3 127882 1jboA 162 8.778 a.1.1.3 84150 1b4aA 149 8.806 a.4.5.3,d.74.2.1 16088,39721 2w57A 150 8.981 1r69 69 9.119 1mzbA 136 9.377 a.4.5.42 91497 2fu4A 83 9.810 2cro 71 10.07 2f2eA 146 10.09 a.4.5.69 132808 2cyyA 151 10.66 a.4.5.32,d.58.4.2 131028,131029 2r1jL 68 11.02 a.35.1.2 151525 3dp7A 363 12.63 1tbxA 99 12.74 a.4.5.48 106748 3bs3A 76 12.74 1ri7A 171 12.95 a.4.5.32,d.58.4.2 97504,97505 2r3sA 335 13.05 1b0nA 111 13.94 a.34.1.1,a.35.1.3 17001,17064 1lliA 92 14.13 a.35.1.2 17025 3eyyA 145 14.99 1ret 43 15.50 2obpA 96 15.98 a.4.5.71 148718 1z1dA 103 16.00 a.4.5.16 124351 2ictA 94 16.33 a.35.1.3 147605 1adrA 76 16.73 a.35.1.2 17042 2eq8C 40 16.81 1y7yA 74 17.26 a.35.1.3 122729 2ip2A 334 18.00 2rn7A 108 18.30 2ebyA 113 18.57 1q1hA 110 20.48 a.4.5.41 95580 3h7uA 335 22.05 1y9qA 192 22.68 a.35.1.8,b.82.1.15 116592,116593 3f7jA 276 24.05 3majA 382 24.20 1ktpA 162 24.54 a.1.1.3 72990 2k9qA 77 24.55 2g9wA 138 24.60 a.4.5.39 147097 1qzzA 374 24.63 a.4.5.29,c.66.1.12 96719,96720 3ir1A 245 24.68 1ylfA 149 25.28 a.4.5.55 123648 3iwfA 107 25.44 2jvlA 107 25.62 3irrA 67 26.21 1jboB 172 26.40 a.1.1.3 84151 3mkwB 138 27.10 1resA 43 27.78 a.4.1.2 16023 3cecA 104 27.93 1rcsA 105 28.71 a.4.12.1 19025 3buvA 326 28.87 6paxA 133 29.94 a.4.1.5,a.4.1.5 64758,64759 2wzmA 283 30.85 3gwzA 369 31.86 1liaA 164 33.77 a.1.1.3 15661 1stzA 338 34.31 a.4.5.51,d.110.2.3 106009,106010 1lmb3 92 34.68 1xs5A 241 34.91 c.94.1.1 115912 3jw4A 148 35.14 1p99A 295 35.20 c.94.1.1 94384 1kn1A 160 36.83 a.1.1.3 77455 3h7rA 331 37.75 2fk8A 318 38.01 c.66.1.18 133648 3mkzA 121 38.09 1x19A 359 38.20 2ef8A 84 38.92 2o3fA 111 39.19 a.4.1.20 148573 1cpcA 162 39.26 a.1.1.3 15643 3i71A 68 39.55 1b8dA 164 39.71 a.1.1.3 15665 2jt1A 77 40.44 1hstA 90 40.51 a.4.5.13 16140 1aoyA 78 40.66 a.4.5.3 16087 1kn1B 161 40.81 a.1.1.3 77456 1mtpA 323 40.93 e.1.1.1 85107 1phnA 162 41.74 a.1.1.3 15641 3hhhA 116 41.91 2v9vA 135 42.86 a.4.5.35,a.4.5.35 152809,152810 1ufmA 84 44.53 a.4.5.47 107816 1qgwC 177 44.77 a.1.1.3 15673 2k9lA 76 46.56 2j5pA 76 48.43 a.4.5.67 138050 3mklA 120 49.51 2bnmA 198 49.66 a.35.1.3,b.82.1.10 128835,128836 1tw3A 360 50.26 a.4.5.29,c.66.1.12 107373,107374 1phnB 172 53.09 a.1.1.3 15642 1c7nA 399 53.25 c.67.1.3 34413 1qgpA 77 53.57 a.4.5.19 16158 3frkA 373 54.57 1gdtA 183 57.28 a.4.1.2,c.53.1.1 16021,33348 2ve8A 73 58.10 a.4.5.67 153008 2croA 71 59.77 a.35.1.2 17038 3b7hA 78 60.21 1r69A 69 62.10 a.35.1.2 17028 3hgwA 101 64.15 3mkyB 189 65.47 2fjrA 189 66.06 1j9iA 68 69.06 a.6.1.5 71619 1vctA 205 69.83 a.7.12.1,d.286.1.1 119986,119987 1cpcB 172 70.10 a.1.1.3 15644 3mn2A 108 71.87 3fmyA 73 72.38 1dpuA 99 72.56 a.4.5.16 16150 1l5aA 436 72.64 c.43.1.2,c.43.1.2 75923,75924 2fx0A 201 73.48 a.4.1.9,a.121.1.1 134269,134270 2fswA 107 74.32 a.4.5.69 134042 2gqqA 163 76.45 2hztA 107 78.07 a.4.5.69 147462 3h4gA 325 80.32 1w85I 49 82.02 a.9.1.1 114347 1q9jA 422 82.29 c.43.1.2,c.43.1.2 104590,104591 1l0oC 243 84.49 a.4.13.2 73405 1allA 160 85.18 a.1.1.3 15647 3fz4A 120 85.81 1u3eM 174 87.08 d.4.1.3,d.285.1.1 107640,107641