# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 3.84e-15 2wv0A 243 4.30e-13 2ek5A 129 1.39e-12 3edpA 236 1.76e-12 3eetA 274 1.91e-12 2di3A 239 2.86e-12 1hw1A 239 2.91e-12 a.4.5.6,a.78.1.1 16111,18441 1e2xA 243 3.08e-12 a.4.5.6,a.78.1.1 16113,18443 3ic7A 126 3.20e-12 3bwgA 239 8.62e-12 a.4.5.6,d.190.1.2 155693,155694 3f8mA 248 1.56e-10 2hs5A 239 1.89e-10 a.4.5.6,a.78.1.1 147379,147380 3c7jA 237 7.05e-10 3fmsA 209 9.18e-10 3ihuA 222 1.50e-09 1on2A 142 0.008215 a.4.5.24,a.76.1.1 87103,87104 1b1bA 140 0.01889 a.4.5.24,a.76.1.1 16215,18421 2d1hA 109 0.02030 a.4.5.50 131125 2hr3A 147 0.03065 a.4.5.28 136678 1c0wA 225 0.03212 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2dtr 226 0.03275 2qq9A 226 0.03577 1fx7A 230 0.04162 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bi0 226 0.04229 2h09A 155 0.04326 1f5tA 121 0.04828 a.4.5.24,a.76.1.1 16203,18409 1sfxA 109 0.05570 a.4.5.50 105505 2ev0A 142 0.05640 a.4.5.24,a.76.1.1 132413,132414 2oqgA 114 0.05908 3cdhA 155 0.06881 1ub9A 100 0.07212 a.4.5.28 99159 3d0sA 227 0.09121 3ctaA 230 0.09133 a.4.5.28,b.43.5.2 156979,156980 2zdbA 195 0.09199 3k0lA 162 0.09698 1y0uA 96 0.1059 a.4.5.5 116310 1j5yA 187 0.1283 a.4.5.1,d.94.2.1 71592,71593 1zybA 232 0.1546 a.4.5.4,b.82.3.2 125815,125816 3gw2A 108 0.1547 2ia0A 171 0.1635 3f3xA 144 0.1738 3f6vA 151 0.1777 3gflA 146 0.1779 3ecoA 139 0.1876 3echA 142 0.2076 2gxgA 146 0.2117 3bddA 142 0.2133 3f6oA 118 0.2135 2ethA 154 0.2188 a.4.5.28 132358 2rdpA 150 0.2192 2nyxA 168 0.2200 3hsrA 140 0.2314 3k69A 162 0.2407 2g7uA 257 0.2420 1s3jA 155 0.2452 a.4.5.28 98437 3g3zA 145 0.2506 2fbkA 181 0.2546 a.4.5.28 133247 1jgsA 138 0.2820 a.4.5.28 66683 1biaA 321 0.2840 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1pdnC 128 0.2881 a.4.1.5 16047 3boqA 160 0.2975 2fbiA 142 0.3002 a.4.5.28 133246 2nnnA 140 0.3002 1lj9A 144 0.3084 a.4.5.28 78035 3cuoA 99 0.3091 1smtA 122 0.3291 a.4.5.5 16109 1ft9A 222 0.3363 a.4.5.4,b.82.3.1 16107,28131 2fbhA 146 0.3458 a.4.5.28 133245 2qwwA 154 0.3807 3gfjA 146 0.3862 3bjaA 139 0.3920 2pexA 153 0.3988 1xd7A 145 0.4157 a.4.5.55 109566 2bv6A 142 0.4195 a.4.5.28 146218 1g6nA 210 0.4238 a.4.5.4,b.82.3.2 16100,28139 2cohA 202 0.4315 a.4.5.4,b.82.3.2 130677,130678 2fa5A 162 0.4433 3gfmA 146 0.4575 3fm5A 150 0.4595 3jthA 98 0.4598 2ia2A 265 0.4786 3bpvA 138 0.4913 2gauA 232 0.5357 a.4.5.4,b.82.3.2 134894,134895 3e6mA 161 0.5563 2frhA 127 0.5762 a.4.5.28 133988 1lnwA 147 0.5848 a.4.5.28 78104 1r1tA 122 0.5857 a.4.5.5 104769 1r1uA 106 0.6043 a.4.5.5 104771 2a61A 145 0.6141 a.4.5.28 126187 1p4xA 250 0.6607 a.4.5.28,a.4.5.28 87784,87785 3bj6A 152 0.6607 2b0lA 102 0.6615 a.4.5.66 127641 3dv8A 220 0.6695 2zcwA 202 0.6710 2fnaA 357 0.6738 a.4.5.11,c.37.1.20 133809,133810 2o0yA 260 0.6809 1bia 321 0.6984 2dtrA 226 0.7172 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 3e97A 231 0.7668 1z91A 147 0.8429 a.4.5.28 124736 1i6xA 209 0.9073 a.4.5.4,b.82.3.2 83673,83674 1okrA 123 0.9297 a.4.5.39 93269 1u2wA 122 0.9304 a.4.5.5 119487 1lvaA 258 0.9341 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 3deuA 166 0.9460 a.4.5.28 157600 2hoeA 380 0.9546 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3cjnA 162 0.9549 3lwfA 159 1.071 1i1gA 141 1.090 a.4.5.32,d.58.4.2 65982,65983 3e6cC 250 1.104 a.4.5.4,b.82.3.2 158038,158039 3e5xA 250 1.112 1mkmA 249 1.139 a.4.5.33,d.110.2.2 79242,79243 2w25A 150 1.191 1lea 84 1.194 1ulyA 192 1.217 a.4.5.58 113297 2pn6A 150 1.246 2ivmA 150 1.278 3kfwX 247 1.390 2h6bA 250 1.470 a.4.5.4,b.82.3.2 147228,147229 2dbbA 151 1.649 2bgcA 238 1.714 a.4.5.4,b.82.3.3 128458,128459 2e7xA 150 1.740 1hw5A 210 1.767 a.4.5.4,b.82.3.2 16098,28137 2qvoA 95 1.787 2qz8A 149 1.827 2h6cA 232 1.975 a.4.5.4,b.82.3.2 147232,147233 2pjpA 121 2.141 2fmyA 220 2.224 3broA 141 2.548 a.4.5.28 155517 1trrA 107 2.596 a.4.12.1 19017 3bp8A 406 2.602 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3fx3A 237 2.603 2cgpA 210 2.729 a.4.5.4,b.82.3.2 16102,28141 2v79A 135 2.934 1jhgA 101 3.027 a.4.12.1 19009 2cfxA 144 3.055 a.4.5.32,d.58.4.2 130395,130396 1g2hA 61 3.541 a.4.1.12 60224 1z6rA 406 3.610 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3h3zA 235 3.750 2cg4A 152 4.381 a.4.5.32,d.58.4.2 130417,130418 2zkzA 99 4.554 1sd4A 126 4.613 a.4.5.39 105428 1wsuA 124 4.728 a.4.5.35,a.4.5.35 121245,121246 2dqlA 115 4.930 3lmmA 583 4.971 3f8bA 116 5.453 2e1nA 138 5.686 1jhfA 202 6.324 a.4.5.2,b.87.1.1 63057,63058 3i4pA 162 6.487 1jboA 162 6.906 a.1.1.3 84150 2qlzA 232 7.008 3go5A 285 7.228 2p8tA 200 7.246 a.4.5.72,d.74.4.2 149315,149316 3l09A 266 7.258 2fe3A 145 7.361 3eqxA 373 7.727 2b5aA 77 7.978 a.35.1.3 127882 1qbjA 81 8.107 a.4.5.19 16155 1r69 69 8.198 2cro 71 8.327 1utxA 66 8.393 a.35.1.3 108034 2w57A 150 8.848 2cyyA 151 9.281 a.4.5.32,d.58.4.2 131028,131029 2p5vA 162 9.448 2f2eA 146 9.814 a.4.5.69 132808 1mzbA 136 9.921 a.4.5.42 91497 1b4aA 149 10.46 a.4.5.3,d.74.2.1 16088,39721 2fu4A 83 10.63 1ri7A 171 11.17 a.4.5.32,d.58.4.2 97504,97505 2r1jL 68 11.36 a.35.1.2 151525 3bs3A 76 12.41 1b0nA 111 12.55 a.34.1.1,a.35.1.3 17001,17064 1adrA 76 12.92 a.35.1.2 17042 1yg2A 179 13.06 a.4.5.61 116681 1ret 43 13.81 1lliA 92 13.96 a.35.1.2 17025 1q1hA 110 14.80 a.4.5.41 95580 3eyyA 145 15.05 2ictA 94 15.45 a.35.1.3 147605 3dp7A 363 16.88 1y7yA 74 16.92 a.35.1.3 122729 1tbxA 99 16.98 a.4.5.48 106748 1z1dA 103 17.47 a.4.5.16 124351 2r3sA 335 17.73 2obpA 96 18.03 a.4.5.71 148718 2eq8C 40 18.39 1y9qA 192 19.18 a.35.1.8,b.82.1.15 116592,116593 1ktpA 162 20.31 a.1.1.3 72990 2k9qA 77 20.58 2rn7A 108 21.04 3iwfA 107 21.63 2ebyA 113 21.66 3mkwB 138 22.78 1ylfA 149 23.21 a.4.5.55 123648 3cecA 104 24.32 1rcsA 105 24.75 a.4.12.1 19025 3ir1A 245 25.89 2ip2A 334 26.88 1jboB 172 27.10 a.1.1.3 84151 1mtpA 323 29.33 e.1.1.1 85107 3jw4A 148 29.43 3gwzA 369 30.51 2jvlA 107 31.71 1liaA 164 31.85 a.1.1.3 15661 3h7uA 335 32.09 3f7jA 276 33.14 3majA 382 33.15 2o3fA 111 33.55 a.4.1.20 148573 2g9wA 138 34.42 a.4.5.39 147097 1kn1A 160 35.08 a.1.1.3 77455 3irrA 67 35.14 1b8dA 164 35.40 a.1.1.3 15665 2v9vA 135 36.04 a.4.5.35,a.4.5.35 152809,152810 1lmb3 92 36.37 1xs5A 241 36.79 c.94.1.1 115912 3buvA 326 36.92 3hhhA 116 36.97 1cpcA 162 37.75 a.1.1.3 15643 2fk8A 318 38.13 c.66.1.18 133648 1resA 43 38.43 a.4.1.2 16023 6paxA 133 38.49 a.4.1.5,a.4.1.5 64758,64759 1p99A 295 39.31 c.94.1.1 94384 1kn1B 161 40.02 a.1.1.3 77456 1qzzA 374 40.83 a.4.5.29,c.66.1.12 96719,96720 1phnA 162 40.89 a.1.1.3 15641 2jt1A 77 42.80 1ufmA 84 42.94 a.4.5.47 107816 3mkzA 121 44.15 1qgwC 177 45.29 a.1.1.3 15673 3i71A 68 45.41 2k9lA 76 46.83 1stzA 338 47.74 a.4.5.51,d.110.2.3 106009,106010 2ef8A 84 48.43 1hstA 90 49.33 a.4.5.13 16140 2wzmA 283 50.02 1gdtA 183 50.23 a.4.1.2,c.53.1.1 16021,33348 1qgpA 77 51.10 a.4.5.19 16158 2croA 71 52.37 a.35.1.2 17038 1x19A 359 52.71 3h7rA 331 53.75 3frkA 373 54.35 2bnmA 198 54.39 a.35.1.3,b.82.1.10 128835,128836 1l5aA 436 54.61 c.43.1.2,c.43.1.2 75923,75924 1phnB 172 56.27 a.1.1.3 15642 3mklA 120 57.48 3mkyB 189 58.05 1vctA 205 58.69 a.7.12.1,d.286.1.1 119986,119987 3fmyA 73 59.64 1r69A 69 60.74 a.35.1.2 17028 2gqqA 163 61.18 3b7hA 78 65.52 2fjrA 189 65.65 3mn2A 108 67.16 1c7nA 399 67.18 c.67.1.3 34413 1wi9A 72 67.91 a.4.5.47 114663 1cpcB 172 70.63 a.1.1.3 15644 1j9iA 68 74.52 a.6.1.5 71619 2ve8A 73 75.78 a.4.5.67 153008 1tw3A 360 75.86 a.4.5.29,c.66.1.12 107373,107374 1l0oC 243 78.26 a.4.13.2 73405 1whzA 70 81.31 d.50.3.2 114656 2j5pA 76 82.49 a.4.5.67 138050 1allA 160 82.70 a.1.1.3 15647 1aoyA 78 83.06 a.4.5.3 16087 1u3eM 174 83.66 d.4.1.3,d.285.1.1 107640,107641 2jjqA 425 85.65 2fswA 107 85.77 a.4.5.69 134042 1dpuA 99 89.09 a.4.5.16 16150