# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 1.24e-12 3ic7A 126 4.67e-11 2wv0A 243 7.71e-11 2ek5A 129 2.26e-10 3eetA 274 2.38e-10 3edpA 236 2.88e-10 1hw1A 239 3.46e-10 a.4.5.6,a.78.1.1 16111,18441 2di3A 239 3.65e-10 1e2xA 243 4.47e-10 a.4.5.6,a.78.1.1 16113,18443 3bwgA 239 6.61e-10 a.4.5.6,d.190.1.2 155693,155694 3f8mA 248 1.19e-08 2hs5A 239 1.59e-08 a.4.5.6,a.78.1.1 147379,147380 3c7jA 237 3.30e-08 3fmsA 209 5.53e-08 3ihuA 222 7.82e-08 1on2A 142 0.03834 a.4.5.24,a.76.1.1 87103,87104 2d1hA 109 0.05859 a.4.5.50 131125 1b1bA 140 0.06991 a.4.5.24,a.76.1.1 16215,18421 2hr3A 147 0.1157 a.4.5.28 136678 2dtr 226 0.1309 2h09A 155 0.1347 1ub9A 100 0.1427 a.4.5.28 99159 1f5tA 121 0.1473 a.4.5.24,a.76.1.1 16203,18409 1bi0 226 0.1537 1fx7A 230 0.1572 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 0.1642 1c0wA 225 0.1763 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 3k0lA 162 0.1949 1sfxA 109 0.1956 a.4.5.50 105505 2ev0A 142 0.2226 a.4.5.24,a.76.1.1 132413,132414 3cdhA 155 0.2379 2oqgA 114 0.3161 1y0uA 96 0.3589 a.4.5.5 116310 1biaA 321 0.4192 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1zybA 232 0.4253 a.4.5.4,b.82.3.2 125815,125816 3gw2A 108 0.4309 2ia0A 171 0.4464 3ctaA 230 0.4532 a.4.5.28,b.43.5.2 156979,156980 2nyxA 168 0.4605 2zdbA 195 0.4703 3f6oA 118 0.4820 2ethA 154 0.4976 a.4.5.28 132358 3f3xA 144 0.5236 2rdpA 150 0.5399 3hsrA 140 0.5407 1jgsA 138 0.5409 a.4.5.28 66683 2pexA 153 0.5444 3d0sA 227 0.5676 2nnnA 140 0.5820 3gflA 146 0.5845 1j5yA 187 0.5872 a.4.5.1,d.94.2.1 71592,71593 2fbkA 181 0.5915 a.4.5.28 133247 1pdnC 128 0.6032 a.4.1.5 16047 3f6vA 151 0.6482 3echA 142 0.6487 1s3jA 155 0.6584 a.4.5.28 98437 3bddA 142 0.6693 1xd7A 145 0.6715 a.4.5.55 109566 3g3zA 145 0.6924 2fbiA 142 0.7041 a.4.5.28 133246 3jthA 98 0.7123 3fm5A 150 0.7280 3k69A 162 0.7342 3ecoA 139 0.7386 2gxgA 146 0.8194 3lwfA 159 0.8384 2g7uA 257 0.9449 3e6mA 161 0.9534 1bia 321 0.9638 1lj9A 144 0.9875 a.4.5.28 78035 1p4xA 250 1.022 a.4.5.28,a.4.5.28 87784,87785 2fbhA 146 1.028 a.4.5.28 133245 2bv6A 142 1.029 a.4.5.28 146218 3gfjA 146 1.086 3boqA 160 1.148 2qwwA 154 1.157 3bpvA 138 1.162 1g6nA 210 1.194 a.4.5.4,b.82.3.2 16100,28139 1lnwA 147 1.213 a.4.5.28 78104 3cuoA 99 1.215 2a61A 145 1.265 a.4.5.28 126187 3deuA 166 1.353 a.4.5.28 157600 3bj6A 152 1.478 3gfmA 146 1.507 2fa5A 162 1.544 1smtA 122 1.631 a.4.5.5 16109 3bjaA 139 1.659 2frhA 127 1.882 a.4.5.28 133988 3cjnA 162 1.928 1i1gA 141 2.008 a.4.5.32,d.58.4.2 65982,65983 3e97A 231 2.193 2cohA 202 2.264 a.4.5.4,b.82.3.2 130677,130678 2ia2A 265 2.324 1u2wA 122 2.329 a.4.5.5 119487 2b0lA 102 2.353 a.4.5.66 127641 1z91A 147 2.485 a.4.5.28 124736 3e5xA 250 2.522 2dtrA 226 2.531 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1lea 84 2.566 3dv8A 220 2.590 2zcwA 202 2.618 2o0yA 260 2.648 2hoeA 380 2.761 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1r1uA 106 2.807 a.4.5.5 104771 2gauA 232 2.808 a.4.5.4,b.82.3.2 134894,134895 1ulyA 192 2.867 a.4.5.58 113297 1r1tA 122 2.893 a.4.5.5 104769 2w25A 150 3.050 1i6xA 209 3.088 a.4.5.4,b.82.3.2 83673,83674 3fx3A 237 3.122 1mkmA 249 3.147 a.4.5.33,d.110.2.2 79242,79243 2ivmA 150 3.262 3e6cC 250 3.377 a.4.5.4,b.82.3.2 158038,158039 2fnaA 357 3.590 a.4.5.11,c.37.1.20 133809,133810 2qvoA 95 3.736 1hw5A 210 3.877 a.4.5.4,b.82.3.2 16098,28137 2pjpA 121 4.309 1okrA 123 4.353 a.4.5.39 93269 1lvaA 258 4.596 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1ft9A 222 4.675 a.4.5.4,b.82.3.1 16107,28131 2e7xA 150 4.845 2pn6A 150 4.883 3h3zA 235 4.929 2h6bA 250 5.267 a.4.5.4,b.82.3.2 147228,147229 1rcsA 105 5.346 a.4.12.1 19025 3kfwX 247 5.414 1jhgA 101 5.447 a.4.12.1 19009 1g2hA 61 5.569 a.4.1.12 60224 2cfxA 144 5.731 a.4.5.32,d.58.4.2 130395,130396 1trrA 107 5.799 a.4.12.1 19017 2bgcA 238 5.947 a.4.5.4,b.82.3.3 128458,128459 3broA 141 6.165 a.4.5.28 155517 2dbbA 151 6.252 3bp8A 406 6.311 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1z6rA 406 6.869 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2cg4A 152 8.584 a.4.5.32,d.58.4.2 130417,130418 2v79A 135 9.017 2h6cA 232 9.320 a.4.5.4,b.82.3.2 147232,147233 2qz8A 149 9.767 3f8bA 116 9.908 1wsuA 124 10.16 a.4.5.35,a.4.5.35 121245,121246 2cgpA 210 10.51 a.4.5.4,b.82.3.2 16102,28141 1jhfA 202 11.04 a.4.5.2,b.87.1.1 63057,63058 1ri7A 171 11.56 a.4.5.32,d.58.4.2 97504,97505 2e1nA 138 11.68 2qlzA 232 11.87 1qbjA 81 12.65 a.4.5.19 16155 3go5A 285 13.71 2p8tA 200 13.86 a.4.5.72,d.74.4.2 149315,149316 3eqxA 373 15.01 2b5aA 77 15.18 a.35.1.3 127882 2fe3A 145 15.18 2f2eA 146 15.26 a.4.5.69 132808 3lmmA 583 15.91 3l09A 266 16.41 2dqlA 115 16.53 1jboA 162 16.57 a.1.1.3 84150 1utxA 66 16.70 a.35.1.3 108034 3i4pA 162 16.92 1sd4A 126 17.28 a.4.5.39 105428 1mzbA 136 18.06 a.4.5.42 91497 2zkzA 99 18.52 2w57A 150 19.16 2cyyA 151 21.03 a.4.5.32,d.58.4.2 131028,131029 2cro 71 21.05 2fu4A 83 22.37 1b0nA 111 23.06 a.34.1.1,a.35.1.3 17001,17064 1q1hA 110 23.34 a.4.5.41 95580 3dp7A 363 23.59 2ictA 94 24.32 a.35.1.3 147605 2p5vA 162 24.53 1b4aA 149 24.83 a.4.5.3,d.74.2.1 16088,39721 1lliA 92 25.49 a.35.1.2 17025 1r69 69 26.12 3bs3A 76 28.64 2obpA 96 29.60 a.4.5.71 148718 2fmyA 220 30.34 2r1jL 68 30.42 a.35.1.2 151525 1ret 43 31.05 2gqqA 163 31.40 1yg2A 179 32.03 a.4.5.61 116681 2rn7A 108 32.80 3hhhA 116 33.15 1y7yA 74 33.90 a.35.1.3 122729 2ebyA 113 34.49 1adrA 76 34.97 a.35.1.2 17042 2eq8C 40 35.20 1z1dA 103 35.79 a.4.5.16 124351 3jw4A 148 36.40 3eyyA 145 37.81 1y9qA 192 37.92 a.35.1.8,b.82.1.15 116592,116593 2g9wA 138 37.96 a.4.5.39 147097 3majA 382 38.17 3cecA 104 39.44 3h7uA 335 40.33 1ktpA 162 40.71 a.1.1.3 72990 2k9qA 77 41.85 1jboB 172 42.26 a.1.1.3 84151 1rp3A 239 42.56 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1resA 43 42.77 a.4.1.2 16023 6paxA 133 42.98 a.4.1.5,a.4.1.5 64758,64759 2r3sA 335 44.38 1j9iA 68 48.07 a.6.1.5 71619 3mkwB 138 48.34 3ir1A 245 49.06 1b8dA 164 50.66 a.1.1.3 15665 2jvlA 107 51.58 1cpcA 162 52.19 a.1.1.3 15643 3f7jA 276 52.36 3mklA 120 52.97 3h7rA 331 53.95 1tbxA 99 54.25 a.4.5.48 106748 1qgpA 77 55.04 a.4.5.19 16158 1liaA 164 55.10 a.1.1.3 15661 1hstA 90 55.12 a.4.5.13 16140 1kn1A 160 55.29 a.1.1.3 77455 1gdtA 183 56.88 a.4.1.2,c.53.1.1 16021,33348 1kn1B 161 57.58 a.1.1.3 77456 2v9vA 135 57.69 a.4.5.35,a.4.5.35 152809,152810 3i71A 68 58.71 1ylfA 149 60.52 a.4.5.55 123648 2fjrA 189 61.01 1phnA 162 63.55 a.1.1.3 15641 1x19A 359 64.04 3buvA 326 64.49 3mn2A 108 65.34 1mtpA 323 66.81 e.1.1.1 85107 2wzmA 283 67.76 3gwzA 369 70.73 3irrA 67 71.65 2fk8A 318 71.96 c.66.1.18 133648 2k9lA 76 74.66 2ef8A 84 77.98 2g9mA 133 81.08 1xs5A 241 86.03 c.94.1.1 115912 3iwfA 107 88.29 1tw3A 360 89.49 a.4.5.29,c.66.1.12 107373,107374