# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 2.52e-12 3ic7A 126 1.05e-10 2wv0A 243 1.11e-10 2ek5A 129 3.39e-10 2di3A 239 3.51e-10 3edpA 236 4.02e-10 1hw1A 239 4.05e-10 a.4.5.6,a.78.1.1 16111,18441 3eetA 274 4.07e-10 1e2xA 243 4.60e-10 a.4.5.6,a.78.1.1 16113,18443 3bwgA 239 9.37e-10 a.4.5.6,d.190.1.2 155693,155694 3f8mA 248 1.43e-08 2hs5A 239 1.84e-08 a.4.5.6,a.78.1.1 147379,147380 3c7jA 237 4.56e-08 3fmsA 209 7.63e-08 3ihuA 222 1.01e-07 1on2A 142 0.03424 a.4.5.24,a.76.1.1 87103,87104 1b1bA 140 0.06637 a.4.5.24,a.76.1.1 16215,18421 2d1hA 109 0.06702 a.4.5.50 131125 2dtr 226 0.1159 2hr3A 147 0.1417 a.4.5.28 136678 1fx7A 230 0.1577 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1f5tA 121 0.1610 a.4.5.24,a.76.1.1 16203,18409 1ub9A 100 0.1622 a.4.5.28 99159 1bi0 226 0.1707 2qq9A 226 0.1737 2h09A 155 0.1770 1c0wA 225 0.1892 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 3k0lA 162 0.2010 2oqgA 114 0.2219 2ev0A 142 0.2317 a.4.5.24,a.76.1.1 132413,132414 1sfxA 109 0.2535 a.4.5.50 105505 3cdhA 155 0.2560 2zdbA 195 0.2974 1y0uA 96 0.3391 a.4.5.5 116310 1zybA 232 0.3397 a.4.5.4,b.82.3.2 125815,125816 3d0sA 227 0.3501 3ctaA 230 0.4113 a.4.5.28,b.43.5.2 156979,156980 1pdnC 128 0.4331 a.4.1.5 16047 2ethA 154 0.4565 a.4.5.28 132358 3f6vA 151 0.4565 3f6oA 118 0.4792 2ia0A 171 0.5026 2nyxA 168 0.5132 1xd7A 145 0.5177 a.4.5.55 109566 2fbkA 181 0.5255 a.4.5.28 133247 2rdpA 150 0.5404 3gw2A 108 0.5424 3hsrA 140 0.5565 1j5yA 187 0.5673 a.4.5.1,d.94.2.1 71592,71593 3gflA 146 0.5725 3f3xA 144 0.6118 3echA 142 0.6226 3fm5A 150 0.6269 1biaA 321 0.6292 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2pexA 153 0.6636 3bddA 142 0.6674 3jthA 98 0.6697 1jgsA 138 0.6800 a.4.5.28 66683 2nnnA 140 0.7262 3ecoA 139 0.7338 3g3zA 145 0.7515 2bv6A 142 0.7619 a.4.5.28 146218 1g6nA 210 0.7661 a.4.5.4,b.82.3.2 16100,28139 3boqA 160 0.7836 2g7uA 257 0.7919 2gxgA 146 0.7992 1s3jA 155 0.8362 a.4.5.28 98437 1lj9A 144 0.8581 a.4.5.28 78035 2frhA 127 0.8696 a.4.5.28 133988 3k69A 162 0.8775 2fbiA 142 0.9613 a.4.5.28 133246 3e6mA 161 0.9614 1p4xA 250 0.9760 a.4.5.28,a.4.5.28 87784,87785 3bpvA 138 1.090 3cuoA 99 1.099 3gfjA 146 1.149 2fbhA 146 1.151 a.4.5.28 133245 2qwwA 154 1.213 1bia 321 1.258 2a61A 145 1.310 a.4.5.28 126187 3bjaA 139 1.331 1lnwA 147 1.337 a.4.5.28 78104 3gfmA 146 1.396 2fa5A 162 1.454 3deuA 166 1.481 a.4.5.28 157600 1i1gA 141 1.565 a.4.5.32,d.58.4.2 65982,65983 2fnaA 357 1.630 a.4.5.11,c.37.1.20 133809,133810 2ia2A 265 1.659 3bj6A 152 1.748 3cjnA 162 1.803 1i6xA 209 1.877 a.4.5.4,b.82.3.2 83673,83674 2b0lA 102 1.889 a.4.5.66 127641 3lwfA 159 1.938 1ft9A 222 1.958 a.4.5.4,b.82.3.1 16107,28131 1smtA 122 1.959 a.4.5.5 16109 1lea 84 1.995 2cohA 202 2.003 a.4.5.4,b.82.3.2 130677,130678 1okrA 123 2.061 a.4.5.39 93269 1u2wA 122 2.076 a.4.5.5 119487 2o0yA 260 2.106 3e5xA 250 2.171 2hoeA 380 2.213 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2qvoA 95 2.271 2w25A 150 2.547 3e97A 231 2.562 1r1tA 122 2.620 a.4.5.5 104769 1z91A 147 2.695 a.4.5.28 124736 2gauA 232 2.707 a.4.5.4,b.82.3.2 134894,134895 2ivmA 150 2.727 3dv8A 220 2.767 3e6cC 250 2.804 a.4.5.4,b.82.3.2 158038,158039 2zcwA 202 2.888 1r1uA 106 2.978 a.4.5.5 104771 1hw5A 210 3.189 a.4.5.4,b.82.3.2 16098,28137 2pjpA 121 3.246 1ulyA 192 3.416 a.4.5.58 113297 2pn6A 150 3.513 2dtrA 226 3.630 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 3kfwX 247 3.643 1mkmA 249 3.835 a.4.5.33,d.110.2.2 79242,79243 1ri7A 171 4.201 a.4.5.32,d.58.4.2 97504,97505 2e7xA 150 4.407 1jhgA 101 4.675 a.4.12.1 19009 1trrA 107 4.716 a.4.12.1 19017 2h6bA 250 4.751 a.4.5.4,b.82.3.2 147228,147229 2dbbA 151 4.751 3fx3A 237 4.753 1g2hA 61 4.762 a.4.1.12 60224 1lvaA 258 5.030 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2v79A 135 5.199 2cfxA 144 5.706 a.4.5.32,d.58.4.2 130395,130396 2bgcA 238 5.901 a.4.5.4,b.82.3.3 128458,128459 3broA 141 5.927 a.4.5.28 155517 2h6cA 232 5.933 a.4.5.4,b.82.3.2 147232,147233 2qz8A 149 6.147 2cgpA 210 6.647 a.4.5.4,b.82.3.2 16102,28141 1z6rA 406 7.385 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1sd4A 126 7.682 a.4.5.39 105428 3bp8A 406 7.959 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2cg4A 152 8.023 a.4.5.32,d.58.4.2 130417,130418 2e1nA 138 8.403 3f8bA 116 9.126 3h3zA 235 9.158 3l09A 266 10.28 3eqxA 373 10.84 2qlzA 232 11.78 2w57A 150 12.43 1qbjA 81 12.52 a.4.5.19 16155 3go5A 285 12.97 2dqlA 115 13.37 1wsuA 124 13.82 a.4.5.35,a.4.5.35 121245,121246 1rcsA 105 13.85 a.4.12.1 19025 1mzbA 136 14.36 a.4.5.42 91497 3i4pA 162 14.39 3lmmA 583 14.56 2f2eA 146 14.61 a.4.5.69 132808 2fe3A 145 14.78 2cyyA 151 14.93 a.4.5.32,d.58.4.2 131028,131029 2b5aA 77 15.59 a.35.1.3 127882 2fu4A 83 15.83 2fmyA 220 16.03 2p8tA 200 16.78 a.4.5.72,d.74.4.2 149315,149316 1utxA 66 17.37 a.35.1.3 108034 1yg2A 179 17.66 a.4.5.61 116681 1jhfA 202 17.75 a.4.5.2,b.87.1.1 63057,63058 2cro 71 18.74 1jboA 162 18.80 a.1.1.3 84150 2zkzA 99 20.67 1r69 69 21.03 2p5vA 162 21.06 2r1jL 68 21.15 a.35.1.2 151525 3eyyA 145 21.96 1q1hA 110 22.15 a.4.5.41 95580 1b0nA 111 22.43 a.34.1.1,a.35.1.3 17001,17064 3dp7A 363 22.58 2ictA 94 24.45 a.35.1.3 147605 1ret 43 24.70 2rn7A 108 24.80 1lliA 92 25.83 a.35.1.2 17025 1adrA 76 26.40 a.35.1.2 17042 2jvlA 107 27.00 2gqqA 163 27.04 2ebyA 113 27.90 1rp3A 239 29.48 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 3majA 382 29.77 2k9qA 77 30.42 1y9qA 192 30.45 a.35.1.8,b.82.1.15 116592,116593 2g9wA 138 30.50 a.4.5.39 147097 1mtpA 323 30.57 e.1.1.1 85107 1z1dA 103 30.68 a.4.5.16 124351 3hhhA 116 30.93 3cecA 104 31.54 1y7yA 74 31.71 a.35.1.3 122729 3mkwB 138 31.76 6paxA 133 32.18 a.4.1.5,a.4.1.5 64758,64759 2obpA 96 32.32 a.4.5.71 148718 1resA 43 33.14 a.4.1.2 16023 1tbxA 99 33.32 a.4.5.48 106748 1jboB 172 36.18 a.1.1.3 84151 3bs3A 76 36.38 1ylfA 149 36.81 a.4.5.55 123648 1b4aA 149 38.99 a.4.5.3,d.74.2.1 16088,39721 3h7rA 331 40.00 1ktpA 162 41.41 a.1.1.3 72990 3ir1A 245 42.77 3jw4A 148 45.27 1kn1B 161 45.41 a.1.1.3 77456 2wzmA 283 47.13 2v9vA 135 47.49 a.4.5.35,a.4.5.35 152809,152810 1qgpA 77 47.51 a.4.5.19 16158 1kn1A 160 48.53 a.1.1.3 77455 3h7uA 335 50.80 1liaA 164 52.80 a.1.1.3 15661 3f7jA 276 54.92 3i71A 68 56.85 1xs5A 241 57.90 c.94.1.1 115912 2r3sA 335 58.37 2eq8C 40 58.44 1j9iA 68 58.70 a.6.1.5 71619 1cpcA 162 58.81 a.1.1.3 15643 1b8dA 164 61.68 a.1.1.3 15665 3fmyA 73 63.19 2fk8A 318 63.53 c.66.1.18 133648 2ip2A 334 64.86 1gdtA 183 65.14 a.4.1.2,c.53.1.1 16021,33348 3mkzA 121 66.69 3gwzA 369 68.15 3iwfA 107 68.23 1hstA 90 69.22 a.4.5.13 16140 2fjrA 189 70.44 3mkyB 189 70.62 1qgwC 177 71.17 a.1.1.3 15673 2ef8A 84 72.15 1p99A 295 72.30 c.94.1.1 94384 1k78A 149 74.10 a.4.1.5,a.4.1.5 68255,68256 2k9lA 76 74.51 3mn2A 108 75.26 1x19A 359 76.26 1phnB 172 76.85 a.1.1.3 15642 1lmb3 92 76.93 1stzA 338 77.06 a.4.5.51,d.110.2.3 106009,106010 3mklA 120 80.40 3bz6A 183 80.96 a.4.5.75,a.4.5.75 155739,155740 3cuqB 218 81.10 1l5aA 436 81.91 c.43.1.2,c.43.1.2 75923,75924 2hztA 107 82.61 a.4.5.69 147462 1neqA 74 83.94 a.35.1.2 17063 1xmaA 145 85.39 a.4.5.61 115477