# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 4.96e-12 2wv0A 243 1.01e-10 3ic7A 126 2.41e-10 3eetA 274 6.95e-10 2di3A 239 9.09e-10 1hw1A 239 9.17e-10 a.4.5.6,a.78.1.1 16111,18441 1e2xA 243 1.04e-09 a.4.5.6,a.78.1.1 16113,18443 2ek5A 129 1.24e-09 3edpA 236 1.41e-09 3bwgA 239 1.63e-09 a.4.5.6,d.190.1.2 155693,155694 3c7jA 237 9.07e-08 2hs5A 239 1.05e-07 a.4.5.6,a.78.1.1 147379,147380 3fmsA 209 2.13e-07 3f8mA 248 3.19e-07 3ihuA 222 5.49e-07 2d1hA 109 0.1097 a.4.5.50 131125 1on2A 142 0.2476 a.4.5.24,a.76.1.1 87103,87104 1b1bA 140 0.3209 a.4.5.24,a.76.1.1 16215,18421 2h09A 155 0.3529 2hr3A 147 0.4403 a.4.5.28 136678 3k0lA 162 0.4470 2fbkA 181 0.5002 a.4.5.28 133247 1f5tA 121 0.5681 a.4.5.24,a.76.1.1 16203,18409 2g7uA 257 0.6197 1sfxA 109 0.7106 a.4.5.50 105505 1y0uA 96 0.7996 a.4.5.5 116310 1xd7A 145 0.8070 a.4.5.55 109566 3cdhA 155 0.8452 2oqgA 114 0.9225 2dtr 226 0.9628 1c0wA 225 1.003 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 3gflA 146 1.016 1ub9A 100 1.091 a.4.5.28 99159 2qq9A 226 1.136 3f3xA 144 1.151 2nyxA 168 1.168 3ecoA 139 1.190 1p4xA 250 1.239 a.4.5.28,a.4.5.28 87784,87785 2bv6A 142 1.309 a.4.5.28 146218 1mkmA 249 1.329 a.4.5.33,d.110.2.2 79242,79243 1bi0 226 1.352 1fx7A 230 1.353 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2o0yA 260 1.382 1biaA 321 1.385 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 3k69A 162 1.386 2ia2A 265 1.386 3ctaA 230 1.404 a.4.5.28,b.43.5.2 156979,156980 3echA 142 1.435 2ethA 154 1.449 a.4.5.28 132358 2fbiA 142 1.475 a.4.5.28 133246 3fm5A 150 1.564 1jgsA 138 1.571 a.4.5.28 66683 2nnnA 140 1.607 3gw2A 108 1.646 3hsrA 140 1.682 3bpvA 138 1.721 3g3zA 145 1.741 2gxgA 146 1.745 3gfjA 146 1.754 1pdnC 128 1.756 a.4.1.5 16047 3jthA 98 1.756 1zybA 232 1.766 a.4.5.4,b.82.3.2 125815,125816 1s3jA 155 1.869 a.4.5.28 98437 3bjaA 139 1.950 2pexA 153 1.957 2ia0A 171 1.961 3boqA 160 2.040 1j5yA 187 2.094 a.4.5.1,d.94.2.1 71592,71593 2ev0A 142 2.109 a.4.5.24,a.76.1.1 132413,132414 2qwwA 154 2.174 1r1tA 122 2.400 a.4.5.5 104769 2rdpA 150 2.541 1smtA 122 2.636 a.4.5.5 16109 3cuoA 99 2.671 3bddA 142 2.688 1lj9A 144 2.689 a.4.5.28 78035 3e6mA 161 2.713 2fbhA 146 2.867 a.4.5.28 133245 2a61A 145 2.984 a.4.5.28 126187 3gfmA 146 3.020 1r1uA 106 3.127 a.4.5.5 104771 3f6vA 151 3.145 2frhA 127 3.188 a.4.5.28 133988 3deuA 166 3.245 a.4.5.28 157600 1z91A 147 3.255 a.4.5.28 124736 3f6oA 118 3.539 3fx3A 237 3.852 3d0sA 227 3.997 2hoeA 380 4.097 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2fa5A 162 4.338 3bj6A 152 4.465 1lnwA 147 4.526 a.4.5.28 78104 3lwfA 159 4.549 3cjnA 162 4.805 2zdbA 195 5.022 1bia 321 5.368 1u2wA 122 5.586 a.4.5.5 119487 1lea 84 5.731 1i1gA 141 6.457 a.4.5.32,d.58.4.2 65982,65983 1g6nA 210 7.579 a.4.5.4,b.82.3.2 16100,28139 1z6rA 406 7.629 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2b0lA 102 7.758 a.4.5.66 127641 2dqlA 115 7.903 3eqxA 373 8.396 2ivmA 150 8.819 2e1nA 138 9.150 2w25A 150 9.282 1okrA 123 9.849 a.4.5.39 93269 2dtrA 226 9.96 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1ft9A 222 9.98 a.4.5.4,b.82.3.1 16107,28131 2fnaA 357 10.10 a.4.5.11,c.37.1.20 133809,133810 1g2hA 61 10.81 a.4.1.12 60224 1b4aA 149 10.82 a.4.5.3,d.74.2.1 16088,39721 3e97A 231 10.98 2obpA 96 11.95 a.4.5.71 148718 3broA 141 12.34 a.4.5.28 155517 2h6bA 250 12.40 a.4.5.4,b.82.3.2 147228,147229 1ulyA 192 12.82 a.4.5.58 113297 3dv8A 220 13.02 1ri7A 171 13.57 a.4.5.32,d.58.4.2 97504,97505 1i6xA 209 15.09 a.4.5.4,b.82.3.2 83673,83674 2pjpA 121 15.40 3f8bA 116 15.43 2h6cA 232 15.98 a.4.5.4,b.82.3.2 147232,147233 3e5xA 250 17.69 3kfwX 247 17.99 2qvoA 95 18.05 3bp8A 406 20.02 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2dbbA 151 20.27 1qbjA 81 21.62 a.4.5.19 16155 2qlzA 232 21.71 1trrA 107 22.07 a.4.12.1 19017 1lvaA 258 23.27 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2bgcA 238 23.82 a.4.5.4,b.82.3.3 128458,128459 2qz8A 149 24.03 3e6cC 250 24.16 a.4.5.4,b.82.3.2 158038,158039 1jhfA 202 24.57 a.4.5.2,b.87.1.1 63057,63058 2cfxA 144 24.68 a.4.5.32,d.58.4.2 130395,130396 2pn6A 150 26.27 1hw5A 210 26.97 a.4.5.4,b.82.3.2 16098,28137 3dp7A 363 27.34 2zkzA 99 27.77 1qgpA 77 28.25 a.4.5.19 16158 2e7xA 150 28.54 2rn7A 108 29.07 2gauA 232 29.37 a.4.5.4,b.82.3.2 134894,134895 1jhgA 101 30.00 a.4.12.1 19009 2cgpA 210 30.01 a.4.5.4,b.82.3.2 16102,28141 1q1hA 110 30.41 a.4.5.41 95580 1sd4A 126 30.96 a.4.5.39 105428 2gqqA 163 32.10 2v79A 135 32.21 1yg2A 179 32.68 a.4.5.61 116681 1z1dA 103 33.55 a.4.5.16 124351 2cohA 202 33.74 a.4.5.4,b.82.3.2 130677,130678 2cyyA 151 34.44 a.4.5.32,d.58.4.2 131028,131029 2fe3A 145 34.62 1wsuA 124 34.85 a.4.5.35,a.4.5.35 121245,121246 1y9qA 192 35.97 a.35.1.8,b.82.1.15 116592,116593 2w57A 150 39.63 3h3zA 235 39.80 2r3sA 335 40.45 2p5vA 162 40.45 1jboA 162 41.62 a.1.1.3 84150 1mzbA 136 46.35 a.4.5.42 91497 3l09A 266 48.28 2zcwA 202 49.26 3gwzA 369 49.45 1rcsA 105 50.05 a.4.12.1 19025 3eyyA 145 50.72 2cg4A 152 51.50 a.4.5.32,d.58.4.2 130417,130418 2fmyA 220 53.67 3i4pA 162 54.11 1xmaA 145 55.89 a.4.5.61 115477 3hhhA 116 55.93 2g9wA 138 56.02 a.4.5.39 147097 3bdzA 397 57.03 3lmmA 583 60.56 3bz6A 183 61.76 a.4.5.75,a.4.5.75 155739,155740 2qtwA 124 61.78 2fu4A 83 64.01 2p8tA 200 64.85 a.4.5.72,d.74.4.2 149315,149316 1rp3A 239 65.98 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1qzzA 374 68.44 a.4.5.29,c.66.1.12 96719,96720 3cecA 104 70.44 1y7yA 74 73.71 a.35.1.3 122729 1tw3A 360 76.15 a.4.5.29,c.66.1.12 107373,107374 1tbxA 99 77.02 a.4.5.48 106748 1b7bA 310 78.18 c.73.1.1 34963 3jw4A 148 78.58 2fswA 107 79.22 a.4.5.69 134042 2we5A 310 80.82 1g63A 181 81.46 c.34.1.1 60299 3cuqB 218 82.95 2wi9A 436 83.49 2hztA 107 83.85 a.4.5.69 147462 2b5aA 77 87.70 a.35.1.3 127882 3hx0A 335 87.87 2eshA 118 88.76 a.4.5.61 132325 2ihtA 573 88.89 c.31.1.3,c.36.1.5,c.36.1.9 147685,147686,147687 2cd8A 436 89.89