# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 1.23e-12 3ic7A 126 2.01e-11 2wv0A 243 3.78e-11 2ek5A 129 1.22e-10 3edpA 236 1.65e-10 1hw1A 239 1.89e-10 a.4.5.6,a.78.1.1 16111,18441 1e2xA 243 2.10e-10 a.4.5.6,a.78.1.1 16113,18443 3eetA 274 2.16e-10 2di3A 239 3.79e-10 3bwgA 239 4.02e-10 a.4.5.6,d.190.1.2 155693,155694 2hs5A 239 1.58e-08 a.4.5.6,a.78.1.1 147379,147380 3c7jA 237 2.09e-08 3f8mA 248 2.93e-08 3fmsA 209 4.94e-08 3ihuA 222 6.29e-08 2d1hA 109 0.09176 a.4.5.50 131125 3k0lA 162 0.1478 1on2A 142 0.1547 a.4.5.24,a.76.1.1 87103,87104 2hr3A 147 0.3162 a.4.5.28 136678 1sfxA 109 0.3462 a.4.5.50 105505 1b1bA 140 0.3487 a.4.5.24,a.76.1.1 16215,18421 3ctaA 230 0.4122 a.4.5.28,b.43.5.2 156979,156980 2oqgA 114 0.4293 2fbkA 181 0.4492 a.4.5.28 133247 2ethA 154 0.4620 a.4.5.28 132358 2dtr 226 0.4755 2h09A 155 0.4939 3gflA 146 0.5074 1f5tA 121 0.5469 a.4.5.24,a.76.1.1 16203,18409 3cdhA 155 0.5718 1ub9A 100 0.6589 a.4.5.28 99159 1bi0 226 0.6901 3f3xA 144 0.7110 2gxgA 146 0.7141 1biaA 321 0.7249 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1c0wA 225 0.8045 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 3boqA 160 0.8238 2qq9A 226 0.8344 3f6vA 151 0.8690 3f6oA 118 0.8717 3ecoA 139 0.9722 2nyxA 168 1.041 1xd7A 145 1.052 a.4.5.55 109566 3echA 142 1.071 3gw2A 108 1.083 3fm5A 150 1.104 2ev0A 142 1.126 a.4.5.24,a.76.1.1 132413,132414 1jgsA 138 1.142 a.4.5.28 66683 2g7uA 257 1.146 1fx7A 230 1.207 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2nnnA 140 1.253 3hsrA 140 1.323 3k69A 162 1.350 3cuoA 99 1.385 1r1uA 106 1.390 a.4.5.5 104771 3e6mA 161 1.419 2rdpA 150 1.431 1lj9A 144 1.446 a.4.5.28 78035 3gfjA 146 1.452 2a61A 145 1.528 a.4.5.28 126187 1pdnC 128 1.530 a.4.1.5 16047 1p4xA 250 1.562 a.4.5.28,a.4.5.28 87784,87785 1s3jA 155 1.573 a.4.5.28 98437 2frhA 127 1.621 a.4.5.28 133988 1bia 321 1.642 3gfmA 146 1.689 3bpvA 138 1.730 2ia0A 171 1.751 1y0uA 96 1.768 a.4.5.5 116310 3g3zA 145 1.773 2fbiA 142 1.860 a.4.5.28 133246 2dtrA 226 1.923 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 3d0sA 227 2.021 2o0yA 260 2.028 3jthA 98 2.033 1mkmA 249 2.040 a.4.5.33,d.110.2.2 79242,79243 3fx3A 237 2.060 3bddA 142 2.092 2fbhA 146 2.111 a.4.5.28 133245 2bv6A 142 2.158 a.4.5.28 146218 2pexA 153 2.183 3bjaA 139 2.441 2zdbA 195 2.489 2fa5A 162 2.543 3bj6A 152 2.784 2ia2A 265 2.811 1lea 84 2.828 1r1tA 122 2.856 a.4.5.5 104769 3cjnA 162 2.889 1zybA 232 2.904 a.4.5.4,b.82.3.2 125815,125816 1smtA 122 3.027 a.4.5.5 16109 2b0lA 102 3.066 a.4.5.66 127641 1u2wA 122 3.076 a.4.5.5 119487 2pjpA 121 3.112 2qwwA 154 3.211 1g6nA 210 3.279 a.4.5.4,b.82.3.2 16100,28139 3deuA 166 3.356 a.4.5.28 157600 1j5yA 187 3.478 a.4.5.1,d.94.2.1 71592,71593 3lwfA 159 4.129 1lnwA 147 4.348 a.4.5.28 78104 1ulyA 192 4.533 a.4.5.58 113297 1i1gA 141 4.903 a.4.5.32,d.58.4.2 65982,65983 2fmyA 220 5.271 2dqlA 115 5.290 1i6xA 209 5.322 a.4.5.4,b.82.3.2 83673,83674 1okrA 123 5.808 a.4.5.39 93269 2e1nA 138 7.260 1z6rA 406 7.488 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3e5xA 250 7.549 3lmmA 583 8.016 1lvaA 258 8.185 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2hoeA 380 8.389 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2ivmA 150 9.138 1g2hA 61 9.317 a.4.1.12 60224 2v79A 135 9.374 1hw5A 210 9.530 a.4.5.4,b.82.3.2 16098,28137 2qvoA 95 9.618 1ri7A 171 9.805 a.4.5.32,d.58.4.2 97504,97505 2w25A 150 10.81 3bp8A 406 11.74 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3broA 141 12.27 a.4.5.28 155517 1ft9A 222 12.44 a.4.5.4,b.82.3.1 16107,28131 1z91A 147 12.63 a.4.5.28 124736 3e6cC 250 12.69 a.4.5.4,b.82.3.2 158038,158039 2gauA 232 13.10 a.4.5.4,b.82.3.2 134894,134895 1rcsA 105 13.62 a.4.12.1 19025 2fnaA 357 13.63 a.4.5.11,c.37.1.20 133809,133810 3kfwX 247 13.85 1trrA 107 14.20 a.4.12.1 19017 2cgpA 210 14.41 a.4.5.4,b.82.3.2 16102,28141 3h3zA 235 15.04 2cohA 202 15.98 a.4.5.4,b.82.3.2 130677,130678 2bgcA 238 17.57 a.4.5.4,b.82.3.3 128458,128459 2f2eA 146 18.49 a.4.5.69 132808 3e97A 231 18.52 1jhgA 101 19.39 a.4.12.1 19009 3dv8A 220 19.86 1jhfA 202 20.94 a.4.5.2,b.87.1.1 63057,63058 2dbbA 151 20.95 1b4aA 149 21.77 a.4.5.3,d.74.2.1 16088,39721 3l09A 266 23.01 2zkzA 99 23.68 2qz8A 149 24.98 2pn6A 150 25.75 2cg4A 152 27.47 a.4.5.32,d.58.4.2 130417,130418 2zcwA 202 27.67 3f8bA 116 28.64 2e7xA 150 29.74 2cfxA 144 30.46 a.4.5.32,d.58.4.2 130395,130396 2hztA 107 32.34 a.4.5.69 147462 3dp7A 363 32.45 2qlzA 232 32.61 1iezA 217 33.50 d.115.1.2 66129 1qbjA 81 34.15 a.4.5.19 16155 3eqxA 373 34.49 1sd4A 126 37.27 a.4.5.39 105428 1wsuA 124 38.73 a.4.5.35,a.4.5.35 121245,121246 2p5vA 162 38.79 1mzbA 136 39.37 a.4.5.42 91497 3eyyA 145 41.32 2gqqA 163 41.89 1jboA 162 42.52 a.1.1.3 84150 2obpA 96 42.98 a.4.5.71 148718 1q1hA 110 43.32 a.4.5.41 95580 2fe3A 145 43.38 2j5pA 76 44.71 a.4.5.67 138050 2r3sA 335 45.57 1z1dA 103 46.39 a.4.5.16 124351 2jvlA 107 46.44 2ebyA 113 46.77 2w57A 150 47.20 2b5aA 77 48.36 a.35.1.3 127882 1qgpA 77 50.88 a.4.5.19 16158 1y9qA 192 54.76 a.35.1.8,b.82.1.15 116592,116593 2cro 71 57.61 3cecA 104 57.63 3go5A 285 57.71 1g57A 217 57.74 d.115.1.2 60253 3hx0A 335 59.59 1yg2A 179 61.14 a.4.5.61 116681 1y7yA 74 61.31 a.35.1.3 122729 1l0oC 243 62.18 a.4.13.2 73405 2h6bA 250 62.78 a.4.5.4,b.82.3.2 147228,147229 3mn2A 108 63.61 2icsA 379 65.32 b.92.1.8,c.1.9.14 137241,137242 3i4pA 162 65.41 2fu4A 83 65.54 2rn7A 108 69.34 1b0nA 111 69.64 a.34.1.1,a.35.1.3 17001,17064 2g9wA 138 69.93 a.4.5.39 147097 1lliA 92 70.03 a.35.1.2 17025 3majA 382 76.16 2ictA 94 76.35 a.35.1.3 147605 1tbxA 99 79.35 a.4.5.48 106748 3e7pA 270 80.12 1p6xA 334 81.34 c.37.1.1 94195 3jw4A 148 83.62 2p8tA 200 84.41 a.4.5.72,d.74.4.2 149315,149316 2eq8C 40 85.17 1ej6A 1289 85.29 i.7.1.1 45967 2w31A 162 86.05 1xvqA 175 86.77 c.47.1.10 116094 2r1jL 68 88.22 a.35.1.2 151525 1wj5A 120 89.62 a.4.5.59 114692