# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 8.62e-06 2ek5A 129 2.97e-05 2wv0A 243 0.000213 3eetA 274 0.000780 2di3A 239 0.001417 3edpA 236 0.001589 1e2xA 243 0.001694 a.4.5.6,a.78.1.1 16113,18443 1hw1A 239 0.001884 a.4.5.6,a.78.1.1 16111,18441 3bwgA 239 0.002113 a.4.5.6,d.190.1.2 155693,155694 2hs5A 239 0.005796 a.4.5.6,a.78.1.1 147379,147380 3fmsA 209 0.006848 3c7jA 237 0.007974 3ic7A 126 0.009440 3ihuA 222 0.01434 3f8mA 248 0.02838 3k0lA 162 0.7097 2nnnA 140 1.290 2gxgA 146 1.700 1ulyA 192 2.803 a.4.5.58 113297 1sfxA 109 2.810 a.4.5.50 105505 1bi0 226 2.923 3gflA 146 3.305 3bpvA 138 3.356 3gfjA 146 3.383 3broA 141 3.437 a.4.5.28 155517 3gfmA 146 3.574 2hr3A 147 4.107 a.4.5.28 136678 2obpA 96 4.822 a.4.5.71 148718 3ecoA 139 5.185 1s3jA 155 5.365 a.4.5.28 98437 1on2A 142 5.465 a.4.5.24,a.76.1.1 87103,87104 2h09A 155 5.650 2g7uA 257 5.690 3f3xA 144 6.111 2ethA 154 6.155 a.4.5.28 132358 1lnwA 147 6.272 a.4.5.28 78104 3lwfA 159 6.516 2fbhA 146 6.905 a.4.5.28 133245 3cjnA 162 7.246 3cdhA 155 7.301 2rdpA 150 7.535 3ctaA 230 8.242 a.4.5.28,b.43.5.2 156979,156980 2ia0A 171 8.385 1sd4A 126 8.639 a.4.5.39 105428 2bv6A 142 9.445 a.4.5.28 146218 2d1hA 109 9.595 a.4.5.50 131125 2fbiA 142 9.603 a.4.5.28 133246 2ia2A 265 9.717 2fa5A 162 9.788 2qq9A 226 9.826 2oqgA 114 9.940 1t6sA 162 9.96 a.4.5.60,a.4.5.60 112271,112272 2nyxA 168 10.05 1c0wA 225 10.06 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 3f6oA 118 10.70 3deuA 166 12.57 a.4.5.28 157600 2p5vA 162 12.66 2pexA 153 12.69 1fx7A 230 12.81 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1lj9A 144 13.35 a.4.5.28 78035 2dqlA 115 13.36 2b0lA 102 13.57 a.4.5.66 127641 1u2wA 122 14.19 a.4.5.5 119487 3mklA 120 14.27 3e6mA 161 14.32 3go5A 285 15.06 1f5tA 121 15.11 a.4.5.24,a.76.1.1 16203,18409 3hsrA 140 15.36 1smtA 122 16.43 a.4.5.5 16109 1tw3A 360 16.46 a.4.5.29,c.66.1.12 107373,107374 1mkmA 249 16.56 a.4.5.33,d.110.2.2 79242,79243 2b5aA 77 16.81 a.35.1.3 127882 1xd7A 145 17.07 a.4.5.55 109566 1y0uA 96 17.35 a.4.5.5 116310 3bddA 142 18.03 3bj6A 152 18.46 2dtrA 226 19.83 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qwwA 154 20.30 2o0yA 260 20.47 1b1bA 140 21.06 a.4.5.24,a.76.1.1 16215,18421 1r1tA 122 22.17 a.4.5.5 104769 1r1uA 106 22.87 a.4.5.5 104771 2cg4A 152 23.48 a.4.5.32,d.58.4.2 130417,130418 1pdnC 128 23.85 a.4.1.5 16047 3gw2A 108 24.02 2r3sA 335 25.12 2ev0A 142 25.14 a.4.5.24,a.76.1.1 132413,132414 2w25A 150 25.59 2dbbA 151 25.88 2a61A 145 26.68 a.4.5.28 126187 2p8tA 200 27.33 a.4.5.72,d.74.4.2 149315,149316 2qz8A 149 29.23 3echA 142 30.49 2qvoA 95 30.92 1sfuA 75 32.33 a.4.5.19 105503 2dtr 226 32.36 2e1nA 138 33.01 2pjpA 121 34.35 2g9wA 138 34.62 a.4.5.39 147097 2cfxA 144 35.41 a.4.5.32,d.58.4.2 130395,130396 3k69A 162 37.67 1ft9A 222 37.67 a.4.5.4,b.82.3.1 16107,28131 1biaA 321 39.75 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1okrA 123 39.81 a.4.5.39 93269 1ub9A 100 40.47 a.4.5.28 99159 1i1gA 141 40.77 a.4.5.32,d.58.4.2 65982,65983 1j5yA 187 41.87 a.4.5.1,d.94.2.1 71592,71593 2f2eA 146 42.23 a.4.5.69 132808 2pn6A 150 42.37 1jgsA 138 43.17 a.4.5.28 66683 2v79A 135 43.54 3fm5A 150 44.01 3jthA 98 46.45 3boqA 160 46.93 3eyyA 145 47.05 2hztA 107 48.61 a.4.5.69 147462 2vxzA 165 48.97 3m66A 270 49.79 2e7xA 150 50.21 1tbxA 99 50.27 a.4.5.48 106748 3f6vA 151 50.38 3bjaA 139 51.62 3g5gA 99 51.87 1lea 84 52.01 2ef8A 84 53.16 1jhfA 202 53.34 a.4.5.2,b.87.1.1 63057,63058 2fe3A 145 54.15 3i4pA 162 55.88 1qbjA 81 57.07 a.4.5.19 16155 1wsuA 124 57.47 a.4.5.35,a.4.5.35 121245,121246 3l09A 266 58.97 3ktgA 199 61.06 2fbkA 181 62.39 a.4.5.28 133247 2ivmA 150 62.94 3g3zA 145 63.68 2ictA 94 63.81 a.35.1.3 147605 2k9mA 130 63.83 3irrA 67 64.33 1x19A 359 64.73 3mkyB 189 65.93 1cukA 203 66.39 a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 3h0dA 155 66.96 2gauA 232 67.17 a.4.5.4,b.82.3.2 134894,134895 1bia 321 67.51 3b7hA 78 68.89 2z99A 219 69.32 1vbuA 328 76.46 c.1.8.3 119963 3dp7A 363 77.97 6paxA 133 78.73 a.4.1.5,a.4.1.5 64758,64759 2dk5A 91 80.27 a.4.5.85 146534 3cuoA 99 81.21 3kfwX 247 81.37 1ylfA 149 81.85 a.4.5.55 123648 3i53A 332 82.17 2fmyA 220 82.27 2r6oA 294 85.14 2fhzA 109 86.07 d.311.1.1 133505 3ijdA 315 87.48 2zkzA 99 89.08 3fyaA 99 89.29