# List of top-scoring protein chains for T0586.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2wv0A 243 4.70e-08 2ra5A 247 2.33e-06 d.190.1.2 151819 3by6A 126 6.48e-06 3ic7A 126 9.90e-06 2ek5A 129 2.05e-05 3eetA 272 2.11e-05 3fmsA 209 3.36e-05 2hs5A 239 4.42e-05 a.4.5.6,a.78.1.1 147379,147380 3bwgA 239 7.21e-05 a.4.5.6,d.190.1.2 155693,155694 3edpA 236 8.23e-05 1e2xA 243 9.30e-05 a.4.5.6,a.78.1.1 16113,18443 1hw1A 239 9.59e-05 a.4.5.6,a.78.1.1 16111,18441 2di3A 239 0.000208 1v4rA 102 0.000217 a.4.5.6 119835 3c7jA 237 0.000238 3ihuA 222 0.000770 3f8mA 248 0.005715 2h09A 155 0.2701 2d1hA 109 2.040 a.4.5.50 131125 3bpvA 138 3.546 3bpxA 148 4.207 2v7fA 150 4.376 a.4.5.84 152721 1lj9A 144 4.738 a.4.5.28 78035 2b0lA 102 5.158 a.4.5.66 127641 1q1hA 110 6.322 a.4.5.41 95580 1o5lA 213 9.199 b.82.3.2 92506 3hrsA 214 13.45 2cfxA 144 13.92 a.4.5.32,d.58.4.2 130395,130396 3h3uA 224 15.03 3d0sA 227 15.61 2gqqA 163 15.89 3i54A 249 16.82 2dbfA 100 19.00 3deuA 166 19.10 a.4.5.28 157600 1i1gA 141 20.51 a.4.5.32,d.58.4.2 65982,65983 1vdwA 254 22.21 e.7.1.1 100569 1xs5A 241 22.46 c.94.1.1 115912 2a61A 145 24.92 a.4.5.28 126187 1biaA 321 24.95 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2g7uA 257 27.52 2fbhA 146 29.05 a.4.5.28 133245 3f3xA 144 29.18 1j5yA 187 31.22 a.4.5.1,d.94.2.1 71592,71593 1mkmA 249 35.78 a.4.5.33,d.110.2.2 79242,79243 3f6vA 151 36.03 1ruoA 209 36.24 a.4.5.4,b.82.3.2 16105,28144 1o3sA 200 39.72 a.4.5.4,b.82.3.2 86609,86610 1cgpA 205 40.52 a.4.5.4,b.82.3.2 16096,28135 3fweA 210 40.73 1o3tA 200 42.01 a.4.5.4,b.82.3.2 86611,86612 1hw5A 210 42.58 a.4.5.4,b.82.3.2 16098,28137 1ft9A 222 43.59 a.4.5.4,b.82.3.1 16107,28131 1i6xA 209 44.90 a.4.5.4,b.82.3.2 83673,83674 2qz8A 149 45.06 1i5zA 209 45.29 a.4.5.4,b.82.3.2 83669,83670 1g6nA 210 45.32 a.4.5.4,b.82.3.2 16100,28139 3eyyA 145 46.00 3jthA 98 46.54 1ylfA 149 46.97 a.4.5.55 123648 3bddA 142 47.34 3lwfA 159 50.02 3kccA 260 50.22 3iwzA 230 50.35 3e3mA 355 54.16 1nkvA 256 57.77 c.66.1.21 80577 2w43A 201 63.55 2w11A 206 63.61 3jyvT 141 67.62 1regX 122 68.19 d.58.27.1 39406 1ku9A 152 72.59 a.4.5.36 77544 2oz6A 207 73.57 a.4.5.4,b.82.3.2 149103,149104 2hgcA 102 75.87 a.4.5.77 147283 3i4pA 162 76.38 3e97A 231 82.51 2bdqA 224 85.11 2p4wA 202 85.11 a.4.5.64 139495 3cjnA 162 88.96