# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 7.73e-13 2wv0A 243 1.67e-12 2ek5A 129 3.56e-12 3edpA 236 1.08e-11 3ihuA 222 1.33e-11 3eetA 274 1.55e-11 2hs5A 239 1.59e-11 a.4.5.6,a.78.1.1 147379,147380 3c7jA 237 3.27e-11 1hw1A 239 3.42e-11 a.4.5.6,a.78.1.1 16111,18441 3bwgA 239 4.21e-11 a.4.5.6,d.190.1.2 155693,155694 3ic7A 126 4.74e-11 2di3A 239 6.87e-11 3fmsA 209 7.64e-11 3f8mA 248 3.86e-09 2qq9A 226 2.58e-06 1fx7A 230 2.93e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtrA 226 9.60e-06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1on2A 142 0.002854 a.4.5.24,a.76.1.1 87103,87104 3l09A 266 0.004517 1ulyA 192 0.004724 a.4.5.58 113297 2h09A 155 0.01261 2hr3A 147 0.01550 a.4.5.28 136678 2qlzA 232 0.01563 3cdhA 155 0.01919 2ev0A 142 0.02062 a.4.5.24,a.76.1.1 132413,132414 3ecoA 139 0.02102 3broA 141 0.02234 a.4.5.28 155517 2fbkA 181 0.02524 a.4.5.28 133247 2rdpA 150 0.03919 3bpvA 138 0.04256 2nnnA 140 0.04380 3hsrA 140 0.04471 1lnwA 147 0.04872 a.4.5.28 78104 3cjnA 162 0.04886 3gfjA 146 0.04954 2ethA 154 0.05071 a.4.5.28 132358 3gflA 146 0.05164 1sfxA 109 0.05255 a.4.5.50 105505 3fm5A 150 0.05482 3k0lA 162 0.05792 3gfmA 146 0.05815 1xd7A 145 0.06062 a.4.5.55 109566 3e6mA 161 0.06068 3boqA 160 0.06091 1jgsA 138 0.06247 a.4.5.28 66683 2gxgA 146 0.06354 3bj6A 152 0.06496 2d1hA 109 0.06585 a.4.5.50 131125 1s3jA 155 0.06601 a.4.5.28 98437 3g3zA 145 0.06702 2fbiA 142 0.06729 a.4.5.28 133246 1lj9A 144 0.06738 a.4.5.28 78035 2a61A 145 0.06764 a.4.5.28 126187 3bddA 142 0.06901 3f3xA 144 0.06907 3kfwX 247 0.07118 2nyxA 168 0.07614 2bv6A 142 0.07843 a.4.5.28 146218 2g7uA 257 0.08406 1mkmA 249 0.08664 a.4.5.33,d.110.2.2 79242,79243 3bjaA 139 0.08715 1r1tA 122 0.08896 a.4.5.5 104769 2pexA 153 0.08903 1z6rA 406 0.09160 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3deuA 166 0.09505 a.4.5.28 157600 3cuoA 99 0.09662 1biaA 321 0.1040 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2o0yA 260 0.1059 1wsuA 124 0.1071 a.4.5.35,a.4.5.35 121245,121246 3e97A 231 0.1170 2qwwA 154 0.1197 2oqgA 114 0.1203 1bia 321 0.1306 2ia2A 265 0.1326 1z91A 147 0.1371 a.4.5.28 124736 2fbhA 146 0.1463 a.4.5.28 133245 3ctaA 230 0.1534 a.4.5.28,b.43.5.2 156979,156980 1r1uA 106 0.1608 a.4.5.5 104771 1ub9A 100 0.1736 a.4.5.28 99159 3lwfA 159 0.1781 1ylfA 149 0.1797 a.4.5.55 123648 3dv8A 220 0.1826 3f6oA 118 0.1904 3bp8A 406 0.2067 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1u2wA 122 0.2248 a.4.5.5 119487 2ia0A 171 0.2339 2cfxA 144 0.2417 a.4.5.32,d.58.4.2 130395,130396 3k69A 162 0.2432 2cg4A 152 0.2658 a.4.5.32,d.58.4.2 130417,130418 3f6vA 151 0.2754 2qz8A 149 0.2807 2e7xA 150 0.2823 3gw2A 108 0.3275 2f2eA 146 0.3395 a.4.5.69 132808 2ivmA 150 0.3414 2fa5A 162 0.3495 1zybA 232 0.3922 a.4.5.4,b.82.3.2 125815,125816 2dbbA 151 0.4146 3e5xA 250 0.4279 1stzA 338 0.4348 a.4.5.51,d.110.2.3 106009,106010 2cyyA 151 0.4362 a.4.5.32,d.58.4.2 131028,131029 1lvaA 258 0.4432 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2frhA 127 0.4487 a.4.5.28 133988 2pn6A 150 0.4596 3d0sA 227 0.4710 1hw5A 210 0.4912 a.4.5.4,b.82.3.2 16098,28137 2w25A 150 0.5133 2b0lA 102 0.5192 a.4.5.66 127641 1j5yA 187 0.5577 a.4.5.1,d.94.2.1 71592,71593 2pjpA 121 0.5888 3jthA 98 0.6574 2h6cA 232 0.7462 a.4.5.4,b.82.3.2 147232,147233 3e6cC 250 0.7689 a.4.5.4,b.82.3.2 158038,158039 3jw4A 148 0.7866 2p5vA 162 0.8491 2z99A 219 0.8783 3ezfA 403 0.8835 2v79A 135 0.9169 2cohA 202 1.014 a.4.5.4,b.82.3.2 130677,130678 2zcwA 202 1.059 3i4pA 162 1.189 2zdbA 195 1.312 2h6bA 250 1.421 a.4.5.4,b.82.3.2 147228,147229 2gauA 232 1.435 a.4.5.4,b.82.3.2 134894,134895 1jhgA 101 1.460 a.4.12.1 19009 2fmyA 220 1.675 3lstA 348 1.688 1hkqA 132 1.854 a.4.5.10 83555 3dp7A 363 1.997 1yg2A 179 2.043 a.4.5.61 116681 3echA 142 2.183 1q1hA 110 2.345 a.4.5.41 95580 2r3sA 335 2.583 2zkzA 99 2.641 3b73A 111 2.732 2hoeA 380 2.852 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2qenA 350 2.985 2gqqA 163 3.499 2dt5A 211 3.531 a.4.5.38,c.2.1.12 131708,131709 2fe3A 145 3.800 3ez7A 398 3.983 3majA 382 3.985 1x19A 359 4.429 3i53A 332 4.694 1e6yB 433 4.810 a.89.1.1,d.58.31.2 18535,39453 2p8tA 200 5.090 a.4.5.72,d.74.4.2 149315,149316 3i71A 68 5.492 1y9qA 192 5.879 a.35.1.8,b.82.1.15 116592,116593 3cuqB 218 5.893 2ebyA 113 5.952 1xesA 413 6.022 3gwzA 369 6.597 3eusA 86 6.740 1z1dA 103 6.903 a.4.5.16 124351 1mzbA 136 7.695 a.4.5.42 91497 2ip2A 334 7.843 2fu4A 83 7.953 2obpA 96 8.156 a.4.5.71 148718 1t6sA 162 8.302 a.4.5.60,a.4.5.60 112271,112272 1utxA 66 8.599 a.35.1.3 108034 1sfuA 75 8.798 a.4.5.19 105503 1b0nA 111 8.842 a.34.1.1,a.35.1.3 17001,17064 2cro 71 8.973 1sd4A 126 9.012 a.4.5.39 105428 2bgcA 238 9.384 a.4.5.4,b.82.3.3 128458,128459 2bnmA 198 9.392 a.35.1.3,b.82.1.10 128835,128836 2r1jL 68 9.748 a.35.1.2 151525 2b5aA 77 9.803 a.35.1.3 127882 2fjrA 189 10.07 1i88A 389 10.21 c.95.1.2,c.95.1.2 66070,66071 1y7yA 74 10.44 a.35.1.3 122729 1tw3A 360 10.81 a.4.5.29,c.66.1.12 107373,107374 1y0uA 96 11.34 a.4.5.5 116310 3f6wA 83 11.38 1t0fA 276 12.00 a.4.5.27,c.52.1.16 112195,112196 1r69A 69 13.58 a.35.1.2 17028 1p4xA 250 13.62 a.4.5.28,a.4.5.28 87784,87785 1r69 69 13.68 3fyaA 99 14.38 1adrA 76 14.44 a.35.1.2 17042 2ictA 94 14.52 a.35.1.3 147605 3g5gA 99 14.54 1g2hA 61 14.91 a.4.1.12 60224 3eyyA 145 16.08 1qzzA 374 16.21 a.4.5.29,c.66.1.12 96719,96720 2croA 71 16.34 a.35.1.2 17038 3ivpA 126 17.95 3cecA 104 17.99 3lmmA 583 18.00 2ppxA 99 18.01 a.35.1.3 149783 2fswA 107 18.73 a.4.5.69 134042 2heoA 67 19.30 3hn2A 312 19.82 1j75A 67 20.16 a.4.5.19 62673 2hztA 107 20.75 a.4.5.69 147462 2v7fA 150 21.43 a.4.5.84 152721 2w57A 150 21.88 2egxA 269 23.00 3h3zA 235 23.10 2jt1A 77 24.49 2htjA 81 24.85 a.4.5.73 147397 3iwfA 107 25.58 1u5tA 233 25.71 a.4.5.54,a.4.5.54 107684,107685 1z7uA 112 25.84 a.4.5.69 124672 2jn6A 97 26.29 a.4.1.19 148144 2d51A 406 27.14 1resA 43 27.46 a.4.1.2 16023 1jhfA 202 27.83 a.4.5.2,b.87.1.1 63057,63058 1hstA 90 28.09 a.4.5.13 16140 2g9wA 138 28.75 a.4.5.39 147097 1tbxA 99 29.41 a.4.5.48 106748 3eqxA 373 29.64 1rp3A 239 30.84 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2rn7A 108 32.27 3a5rA 387 32.53 3hwrA 318 33.56 1vb5A 276 33.67 c.124.1.5 113604 1bl0A 129 33.72 a.4.1.8,a.4.1.8 16053,16054 2hq2A 354 33.99 e.62.1.1 136656 2o3fA 111 34.40 a.4.1.20 148573 3mn2A 108 34.43 2zy5A 546 34.76 2uz1A 563 34.84 3b7hA 78 35.09 1u8bA 133 35.68 1ldjA 760 36.00 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 3bz6A 183 36.57 a.4.5.75,a.4.5.75 155739,155740 2fnaA 357 37.44 a.4.5.11,c.37.1.20 133809,133810 3f8bA 116 38.17 3lsgA 103 39.38 2eq8C 40 41.09 1j9iA 68 44.66 a.6.1.5 71619 3c2bA 221 47.03 3g17A 294 47.21 2j5pA 76 47.79 a.4.5.67 138050 1d7uA 433 51.17 c.67.1.4 34439 1yyvA 131 51.27 a.4.5.69 124254 2zmeA 258 51.34 2fx0A 201 51.66 a.4.1.9,a.121.1.1 134269,134270 2qwtA 196 52.00 1u5tB 169 52.65 a.4.5.54,a.4.5.54 107686,107687 3mklA 120 52.82 3hhhA 116 53.99 3df8A 111 56.52 3br5A 194 57.23 2z7bA 270 58.04 1b9mA 265 58.78 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 2j0pA 345 58.94 e.62.1.1 137903 1iq8A 582 59.70 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1qhhB 273 59.98 3egoA 307 60.39 1w85I 49 61.21 a.9.1.1 114347 3frkA 373 62.16 1s6lA 212 62.68 a.4.5.79,d.357.1.2 145773,145774 1ufmA 84 63.38 a.4.5.47 107816 2dqrA 122 64.80 3hefA 143 65.34 1qbjA 81 65.80 a.4.5.19 16155 1rzsA 61 66.83 a.35.1.2 105139 3dojA 310 67.37 3br3A 194 67.59 3elkA 117 68.62 3edyA 544 69.25 3irrA 67 69.83 2id3A 225 71.55 a.4.1.9,a.121.1.1 137261,137262 1gsaA 316 71.77 c.30.1.3,d.142.1.1 31718,41477 2fhzA 109 71.96 d.311.1.1 133505 2e1nA 138 74.55 2bjfA 329 74.98 1f5qB 252 75.02 a.74.1.1,a.74.1.1 18362,18363 1u0mA 382 75.23 c.95.1.2,c.95.1.2 107557,107558 3bhqA 211 75.68 3gpvA 148 77.33 3br2A 194 79.67 1e8cA 498 82.81 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1r7jA 95 83.72 a.4.5.49 104836 2jj7A 186 84.15 1qvtA 194 84.61 a.4.1.9,a.121.1.1 104602,104603 3gbgA 276 85.23 2h27A 73 86.79 a.4.13.2 135993 3btiA 188 87.34 a.4.1.9,a.121.1.1 155566,155567 1zodA 433 87.96 c.67.1.4 125437 2bcqA 335 89.18 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 3i6dA 470 89.51