# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 1.98e-12 2wv0A 243 5.45e-12 2ek5A 129 1.71e-11 3edpA 236 2.60e-11 3eetA 274 3.46e-11 2hs5A 239 3.65e-11 a.4.5.6,a.78.1.1 147379,147380 3ihuA 222 4.06e-11 3bwgA 239 7.68e-11 a.4.5.6,d.190.1.2 155693,155694 3c7jA 237 8.23e-11 1hw1A 239 1.01e-10 a.4.5.6,a.78.1.1 16111,18441 2di3A 239 1.40e-10 3fmsA 209 1.98e-10 3ic7A 126 2.06e-10 3f8mA 248 6.12e-09 2qq9A 226 3.43e-06 1fx7A 230 4.01e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtrA 226 1.53e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1on2A 142 0.002933 a.4.5.24,a.76.1.1 87103,87104 3l09A 266 0.005023 1ulyA 192 0.006285 a.4.5.58 113297 2h09A 155 0.01289 2qlzA 232 0.01389 3cdhA 155 0.01501 3ecoA 139 0.02117 2hr3A 147 0.02281 a.4.5.28 136678 2ev0A 142 0.02408 a.4.5.24,a.76.1.1 132413,132414 3broA 141 0.02522 a.4.5.28 155517 3cjnA 162 0.03948 3hsrA 140 0.03950 3bj6A 152 0.04085 1s3jA 155 0.04295 a.4.5.28 98437 2fbkA 181 0.04383 a.4.5.28 133247 2rdpA 150 0.04456 1lnwA 147 0.05084 a.4.5.28 78104 3gfmA 146 0.05215 3gflA 146 0.05261 3gfjA 146 0.05373 3f3xA 144 0.05499 2ethA 154 0.05652 a.4.5.28 132358 2d1hA 109 0.05662 a.4.5.50 131125 3g3zA 145 0.05989 3bpvA 138 0.06149 1jgsA 138 0.06190 a.4.5.28 66683 3k0lA 162 0.06540 3e97A 231 0.06545 1xd7A 145 0.06598 a.4.5.55 109566 1sfxA 109 0.06600 a.4.5.50 105505 3boqA 160 0.06623 1lj9A 144 0.06661 a.4.5.28 78035 2gxgA 146 0.06722 1wsuA 124 0.06756 a.4.5.35,a.4.5.35 121245,121246 2pexA 153 0.07476 3bddA 142 0.07768 2nnnA 140 0.07847 3fm5A 150 0.08450 2a61A 145 0.08572 a.4.5.28 126187 3e6mA 161 0.08885 1mkmA 249 0.08967 a.4.5.33,d.110.2.2 79242,79243 3bjaA 139 0.09034 3kfwX 247 0.09118 3cuoA 99 0.09207 2nyxA 168 0.09442 1r1tA 122 0.09558 a.4.5.5 104769 1z91A 147 0.09825 a.4.5.28 124736 3k69A 162 0.0998 2g7uA 257 0.1014 2fbiA 142 0.1027 a.4.5.28 133246 2qwwA 154 0.1106 2bv6A 142 0.1175 a.4.5.28 146218 3deuA 166 0.1201 a.4.5.28 157600 1ylfA 149 0.1236 a.4.5.55 123648 2ia0A 171 0.1321 2ia2A 265 0.1359 3ctaA 230 0.1419 a.4.5.28,b.43.5.2 156979,156980 2e7xA 150 0.1420 1r1uA 106 0.1462 a.4.5.5 104771 2fbhA 146 0.1492 a.4.5.28 133245 2o0yA 260 0.1748 3d0sA 227 0.1774 3dv8A 220 0.1791 2ivmA 150 0.1913 2pn6A 150 0.1929 2oqgA 114 0.2023 2frhA 127 0.2030 a.4.5.28 133988 2dbbA 151 0.2050 3f6vA 151 0.2121 1z6rA 406 0.2123 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1lvaA 258 0.2140 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1ub9A 100 0.2207 a.4.5.28 99159 1biaA 321 0.2252 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2cg4A 152 0.2331 a.4.5.32,d.58.4.2 130417,130418 1stzA 338 0.2352 a.4.5.51,d.110.2.3 106009,106010 2cfxA 144 0.2353 a.4.5.32,d.58.4.2 130395,130396 1zybA 232 0.2447 a.4.5.4,b.82.3.2 125815,125816 2cyyA 151 0.2718 a.4.5.32,d.58.4.2 131028,131029 3f6oA 118 0.2820 1bia 321 0.2857 3lwfA 159 0.2933 3bp8A 406 0.3113 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1u2wA 122 0.3135 a.4.5.5 119487 2w25A 150 0.3188 2cohA 202 0.3377 a.4.5.4,b.82.3.2 130677,130678 2qz8A 149 0.3409 2zcwA 202 0.3456 1hw5A 210 0.3833 a.4.5.4,b.82.3.2 16098,28137 3e6cC 250 0.3871 a.4.5.4,b.82.3.2 158038,158039 3gw2A 108 0.3921 2f2eA 146 0.4105 a.4.5.69 132808 2zdbA 195 0.4629 2b0lA 102 0.4637 a.4.5.66 127641 3i4pA 162 0.4897 2fa5A 162 0.5746 2h6bA 250 0.5773 a.4.5.4,b.82.3.2 147228,147229 2p5vA 162 0.6153 3jthA 98 0.6340 3e5xA 250 0.6363 1j5yA 187 0.6491 a.4.5.1,d.94.2.1 71592,71593 2fmyA 220 0.6688 2v79A 135 0.6890 3jw4A 148 0.6892 2z99A 219 0.7123 2h6cA 232 0.7161 a.4.5.4,b.82.3.2 147232,147233 2pjpA 121 0.7863 2gauA 232 0.9153 a.4.5.4,b.82.3.2 134894,134895 1yg2A 179 1.081 a.4.5.61 116681 3ezfA 403 1.170 3echA 142 1.433 1jhgA 101 1.862 a.4.12.1 19009 1hkqA 132 2.311 a.4.5.10 83555 1e6yB 433 2.313 a.89.1.1,d.58.31.2 18535,39453 2hoeA 380 2.431 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2gqqA 163 2.435 2qenA 350 2.650 2fe3A 145 2.807 3gwzA 369 2.821 3b73A 111 2.885 2zkzA 99 3.484 2r3sA 335 3.618 3cuqB 218 4.040 1q1hA 110 4.192 a.4.5.41 95580 3majA 382 4.285 1mzbA 136 4.697 a.4.5.42 91497 2dt5A 211 4.753 a.4.5.38,c.2.1.12 131708,131709 2fu4A 83 4.928 1y9qA 192 5.193 a.35.1.8,b.82.1.15 116592,116593 3eusA 86 5.895 3lstA 348 5.940 2b5aA 77 6.015 a.35.1.3 127882 2fjrA 189 6.262 2heoA 67 6.305 2zy5A 546 6.373 2ebyA 113 6.563 1t6sA 162 6.607 a.4.5.60,a.4.5.60 112271,112272 3eqxA 373 6.923 2obpA 96 7.154 a.4.5.71 148718 1utxA 66 7.293 a.35.1.3 108034 2r1jL 68 7.454 a.35.1.2 151525 3dp7A 363 7.552 3i71A 68 7.681 1p4xA 250 7.779 a.4.5.28,a.4.5.28 87784,87785 1b0nA 111 8.058 a.34.1.1,a.35.1.3 17001,17064 3f6wA 83 8.208 3i53A 332 8.295 2bnmA 198 8.339 a.35.1.3,b.82.1.10 128835,128836 1y0uA 96 8.453 a.4.5.5 116310 3h3zA 235 9.239 2ip2A 334 9.257 2p8tA 200 9.874 a.4.5.72,d.74.4.2 149315,149316 1y7yA 74 9.921 a.35.1.3 122729 1x19A 359 9.96 1sfuA 75 9.99 a.4.5.19 105503 2cro 71 10.13 1z1dA 103 10.58 a.4.5.16 124351 3lmmA 583 11.13 3ivpA 126 11.68 3g5gA 99 11.71 2ictA 94 11.76 a.35.1.3 147605 3ez7A 398 11.80 2bgcA 238 12.30 a.4.5.4,b.82.3.3 128458,128459 3eyyA 145 12.62 1xesA 413 12.66 3hn2A 312 12.70 2egxA 269 12.74 1sd4A 126 13.10 a.4.5.39 105428 1r69 69 13.57 2w57A 150 14.47 1j75A 67 14.52 a.4.5.19 62673 1r69A 69 14.63 a.35.1.2 17028 1i88A 389 15.58 c.95.1.2,c.95.1.2 66070,66071 3cecA 104 15.79 2fswA 107 16.52 a.4.5.69 134042 2jt1A 77 16.58 2ppxA 99 16.68 a.35.1.3 149783 2croA 71 17.64 a.35.1.2 17038 3fyaA 99 17.89 3bz6A 183 18.04 a.4.5.75,a.4.5.75 155739,155740 3iwfA 107 18.24 2g9wA 138 18.44 a.4.5.39 147097 1t0fA 276 18.56 a.4.5.27,c.52.1.16 112195,112196 2zmeA 258 20.09 2v7fA 150 20.37 a.4.5.84 152721 3fx3A 237 21.12 2hq2A 354 22.22 e.62.1.1 136656 1g2hA 61 22.37 a.4.1.12 60224 3f8bA 116 23.10 1adrA 76 23.32 a.35.1.2 17042 1hstA 90 24.20 a.4.5.13 16140 1ej6A 1289 25.19 i.7.1.1 45967 1iq8A 582 25.24 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1tw3A 360 26.39 a.4.5.29,c.66.1.12 107373,107374 1qzzA 374 27.03 a.4.5.29,c.66.1.12 96719,96720 1rp3A 239 27.76 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2jn6A 97 27.84 a.4.1.19 148144 3lsgA 103 28.02 3b7hA 78 28.07 2rn7A 108 28.08 1jhfA 202 28.44 a.4.5.2,b.87.1.1 63057,63058 1tbxA 99 28.75 a.4.5.48 106748 2hztA 107 29.67 a.4.5.69 147462 2j5pA 76 29.88 a.4.5.67 138050 1z7uA 112 29.95 a.4.5.69 124672 2o3fA 111 31.38 a.4.1.20 148573 1zejA 293 32.26 3hhhA 116 34.18 2fnaA 357 34.47 a.4.5.11,c.37.1.20 133809,133810 3a5rA 387 39.12 3egoA 307 39.38 2d51A 406 40.86 2eq8C 40 41.35 1u5tB 169 42.30 a.4.5.54,a.4.5.54 107686,107687 1u8bA 133 42.74 3g17A 294 43.38 3c2bA 221 44.90 2id3A 225 46.16 a.4.1.9,a.121.1.1 137261,137262 1b9mA 265 46.79 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 2z7bA 270 49.72 2j0pA 345 49.99 e.62.1.1 137903 1qhhB 273 51.61 1mi3A 322 52.27 c.1.7.1 91274 2fx0A 201 52.35 a.4.1.9,a.121.1.1 134269,134270 1bl0A 129 52.56 a.4.1.8,a.4.1.8 16053,16054 2v9vA 135 53.13 a.4.5.35,a.4.5.35 152809,152810 3mn2A 108 53.73 3elkA 117 55.59 2bcqA 335 56.13 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 2bjfA 329 56.71 1e8cA 498 57.30 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2uz1A 563 57.54 3hwrA 318 57.66 3mklA 120 57.91 2jj7A 186 59.09 1qbjA 81 59.67 a.4.5.19 16155 2eyuA 261 60.53 1ufmA 84 60.66 a.4.5.47 107816 2akoA 251 60.74 c.73.1.3 126923 2fhzA 109 60.99 d.311.1.1 133505 1w85I 49 61.02 a.9.1.1 114347 3gpvA 148 61.15 2htjA 81 61.88 a.4.5.73 147397 2qwtA 196 62.70 3h3eA 267 62.86 1d7uA 433 63.60 c.67.1.4 34439 3br5A 194 63.94 2dqrA 122 64.33 1fseA 74 64.66 a.4.6.2 60000 3i6dA 470 64.72 1resA 43 65.45 a.4.1.2 16023 3fjyA 364 67.52 1yyvA 131 68.97 a.4.5.69 124254 3kaxA 383 69.23 3df8A 111 69.36 1j9iA 68 70.74 a.6.1.5 71619 2ve8A 73 73.29 a.4.5.67 153008 2ns0A 85 73.57 a.4.5.76 148381 3br3A 194 76.20 1vb5A 276 76.75 c.124.1.5 113604 2e1nA 138 76.85 3f52A 117 77.63 3irrA 67 78.34 3br2A 194 80.34 2v57A 190 80.63 2zivB 351 81.22 3htuA 79 81.45 3bqzA 194 81.91 1j96A 323 81.93 c.1.7.1 71616 1r7jA 95 82.83 a.4.5.49 104836 3lfxA 319 83.75 3hefA 143 84.29 2pezA 179 85.05 2wzmA 283 85.32 3kz9A 206 85.84 1w5tA 412 86.90 a.4.5.11,c.37.1.20 114255,114256 3frkA 373 88.53 1l9cA 389 88.81 c.3.1.2,d.16.1.3 77815,77816