# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 1.37e-12 2wv0A 243 3.96e-12 2ek5A 129 1.02e-11 3edpA 236 2.14e-11 3eetA 274 2.23e-11 2hs5A 239 2.72e-11 a.4.5.6,a.78.1.1 147379,147380 3ihuA 222 3.14e-11 3c7jA 237 5.20e-11 3bwgA 239 6.73e-11 a.4.5.6,d.190.1.2 155693,155694 1hw1A 239 7.28e-11 a.4.5.6,a.78.1.1 16111,18441 2di3A 239 1.03e-10 3fmsA 209 1.31e-10 3ic7A 126 1.90e-10 3f8mA 248 5.59e-09 2qq9A 226 2.91e-06 1fx7A 230 4.41e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtrA 226 1.68e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 3l09A 266 0.003675 1on2A 142 0.003900 a.4.5.24,a.76.1.1 87103,87104 1ulyA 192 0.006737 a.4.5.58 113297 2qlzA 232 0.01210 2h09A 155 0.01358 3cdhA 155 0.01707 3ecoA 139 0.02414 2ev0A 142 0.02780 a.4.5.24,a.76.1.1 132413,132414 3broA 141 0.02794 a.4.5.28 155517 2hr3A 147 0.03024 a.4.5.28 136678 2fbkA 181 0.03557 a.4.5.28 133247 1lnwA 147 0.04341 a.4.5.28 78104 3cjnA 162 0.04460 2rdpA 150 0.04836 3bj6A 152 0.04857 3hsrA 140 0.04983 1s3jA 155 0.05244 a.4.5.28 98437 3bpvA 138 0.06277 3gfmA 146 0.06556 3gfjA 146 0.06648 3g3zA 145 0.06691 3boqA 160 0.06765 3gflA 146 0.06779 2ethA 154 0.06899 a.4.5.28 132358 1lj9A 144 0.06916 a.4.5.28 78035 3f3xA 144 0.07003 3bjaA 139 0.07038 1sfxA 109 0.07091 a.4.5.50 105505 3k0lA 162 0.07121 3bddA 142 0.07157 2d1hA 109 0.07190 a.4.5.50 131125 1jgsA 138 0.07341 a.4.5.28 66683 3e97A 231 0.07627 1xd7A 145 0.07737 a.4.5.55 109566 2gxgA 146 0.07778 2nnnA 140 0.08141 2nyxA 168 0.08265 3cuoA 99 0.08387 1wsuA 124 0.08515 a.4.5.35,a.4.5.35 121245,121246 3e6mA 161 0.08558 3fm5A 150 0.09016 2a61A 145 0.09585 a.4.5.28 126187 2g7uA 257 0.09657 3kfwX 247 0.09919 2qwwA 154 0.1035 3k69A 162 0.1075 1z91A 147 0.1086 a.4.5.28 124736 2pexA 153 0.1101 1mkmA 249 0.1157 a.4.5.33,d.110.2.2 79242,79243 2ia2A 265 0.1188 2fbiA 142 0.1204 a.4.5.28 133246 2e7xA 150 0.1261 2bv6A 142 0.1312 a.4.5.28 146218 1r1tA 122 0.1324 a.4.5.5 104769 1ylfA 149 0.1364 a.4.5.55 123648 2ia0A 171 0.1465 3deuA 166 0.1601 a.4.5.28 157600 3ctaA 230 0.1662 a.4.5.28,b.43.5.2 156979,156980 2pn6A 150 0.1697 2fbhA 146 0.1713 a.4.5.28 133245 1z6rA 406 0.1716 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2dbbA 151 0.1771 2o0yA 260 0.1836 1r1uA 106 0.1903 a.4.5.5 104771 2oqgA 114 0.1916 1ub9A 100 0.1966 a.4.5.28 99159 2cg4A 152 0.2084 a.4.5.32,d.58.4.2 130417,130418 2frhA 127 0.2130 a.4.5.28 133988 2cfxA 144 0.2198 a.4.5.32,d.58.4.2 130395,130396 2ivmA 150 0.2211 3dv8A 220 0.2212 1stzA 338 0.2237 a.4.5.51,d.110.2.3 106009,106010 3d0sA 227 0.2286 2cyyA 151 0.2345 a.4.5.32,d.58.4.2 131028,131029 3f6vA 151 0.2509 3f6oA 118 0.2656 3lwfA 159 0.2662 2qz8A 149 0.2733 1biaA 321 0.2769 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1lvaA 258 0.2796 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1u2wA 122 0.2827 a.4.5.5 119487 3bp8A 406 0.3266 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1bia 321 0.3705 2w25A 150 0.3753 3e6cC 250 0.3769 a.4.5.4,b.82.3.2 158038,158039 1zybA 232 0.3872 a.4.5.4,b.82.3.2 125815,125816 2fa5A 162 0.4013 1hw5A 210 0.4427 a.4.5.4,b.82.3.2 16098,28137 3i4pA 162 0.4448 2f2eA 146 0.4485 a.4.5.69 132808 2zdbA 195 0.4902 1j5yA 187 0.4991 a.4.5.1,d.94.2.1 71592,71593 2cohA 202 0.5333 a.4.5.4,b.82.3.2 130677,130678 2p5vA 162 0.5348 3gw2A 108 0.5382 2zcwA 202 0.5599 2b0lA 102 0.5758 a.4.5.66 127641 3e5xA 250 0.6395 2z99A 219 0.6406 2h6cA 232 0.7222 a.4.5.4,b.82.3.2 147232,147233 2h6bA 250 0.7525 a.4.5.4,b.82.3.2 147228,147229 3jthA 98 0.7939 2v79A 135 0.8322 3jw4A 148 0.8645 2pjpA 121 0.8910 2fmyA 220 1.020 1yg2A 179 1.031 a.4.5.61 116681 3ezfA 403 1.076 2gauA 232 1.255 a.4.5.4,b.82.3.2 134894,134895 1jhgA 101 1.521 a.4.12.1 19009 3echA 142 1.781 2gqqA 163 2.152 1e6yB 433 2.258 a.89.1.1,d.58.31.2 18535,39453 2qenA 350 2.292 1hkqA 132 2.293 a.4.5.10 83555 2fe3A 145 2.973 3gwzA 369 2.988 2hoeA 380 3.331 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3b73A 111 3.485 2zkzA 99 4.015 2r3sA 335 4.174 1q1hA 110 4.315 a.4.5.41 95580 1y9qA 192 4.577 a.35.1.8,b.82.1.15 116592,116593 3lstA 348 4.751 1mzbA 136 4.974 a.4.5.42 91497 2fu4A 83 5.141 3majA 382 5.269 3cuqB 218 5.312 3dp7A 363 6.024 2ebyA 113 6.087 1t6sA 162 6.300 a.4.5.60,a.4.5.60 112271,112272 2b5aA 77 6.614 a.35.1.3 127882 2heoA 67 6.880 2fjrA 189 6.882 3eusA 86 6.998 2bnmA 198 7.536 a.35.1.3,b.82.1.10 128835,128836 1utxA 66 7.576 a.35.1.3 108034 1b0nA 111 7.849 a.34.1.1,a.35.1.3 17001,17064 2r1jL 68 7.855 a.35.1.2 151525 2dt5A 211 8.067 a.4.5.38,c.2.1.12 131708,131709 3i53A 332 8.591 1y7yA 74 8.758 a.35.1.3 122729 2zy5A 546 8.912 1p4xA 250 9.060 a.4.5.28,a.4.5.28 87784,87785 3h3zA 235 9.593 3f6wA 83 9.651 2cro 71 9.871 3eqxA 373 9.945 1z1dA 103 10.04 a.4.5.16 124351 3i71A 68 10.12 1y0uA 96 10.19 a.4.5.5 116310 2p8tA 200 10.21 a.4.5.72,d.74.4.2 149315,149316 1sfuA 75 10.36 a.4.5.19 105503 1x19A 359 10.53 3lmmA 583 10.82 2bgcA 238 11.09 a.4.5.4,b.82.3.3 128458,128459 3hn2A 312 11.16 2obpA 96 11.34 a.4.5.71 148718 3g5gA 99 11.75 1j75A 67 11.87 a.4.5.19 62673 3ivpA 126 12.30 2ip2A 334 12.76 2ictA 94 12.87 a.35.1.3 147605 3eyyA 145 13.81 1r69 69 13.84 1xesA 413 14.51 2egxA 269 14.57 1r69A 69 14.92 a.35.1.2 17028 3ez7A 398 15.31 3iwfA 107 16.43 3fyaA 99 16.52 2ppxA 99 16.55 a.35.1.3 149783 1sd4A 126 16.76 a.4.5.39 105428 2w57A 150 16.81 3cecA 104 17.20 2croA 71 17.32 a.35.1.2 17038 2fswA 107 18.48 a.4.5.69 134042 1ej6A 1289 19.56 i.7.1.1 45967 2zmeA 258 19.69 1qzzA 374 19.84 a.4.5.29,c.66.1.12 96719,96720 1i88A 389 20.43 c.95.1.2,c.95.1.2 66070,66071 2hq2A 354 21.07 e.62.1.1 136656 1hstA 90 21.45 a.4.5.13 16140 1tw3A 360 21.83 a.4.5.29,c.66.1.12 107373,107374 3fx3A 237 22.63 1t0fA 276 22.80 a.4.5.27,c.52.1.16 112195,112196 1iq8A 582 23.05 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 2g9wA 138 23.33 a.4.5.39 147097 3bz6A 183 23.52 a.4.5.75,a.4.5.75 155739,155740 1adrA 76 24.03 a.35.1.2 17042 3f8bA 116 24.18 2jt1A 77 24.39 1g2hA 61 25.40 a.4.1.12 60224 1z7uA 112 25.48 a.4.5.69 124672 3egoA 307 26.58 3b7hA 78 26.89 2rn7A 108 27.47 2o3fA 111 27.87 a.4.1.20 148573 2v7fA 150 27.90 a.4.5.84 152721 1rp3A 239 28.36 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1zejA 293 29.62 3lsgA 103 30.14 2jn6A 97 31.70 a.4.1.19 148144 3hhhA 116 32.97 2fnaA 357 33.16 a.4.5.11,c.37.1.20 133809,133810 3g17A 294 35.09 2j5pA 76 35.39 a.4.5.67 138050 1tbxA 99 37.76 a.4.5.48 106748 2hztA 107 38.43 a.4.5.69 147462 3elkA 117 41.19 2bcqA 335 42.29 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 2eq8C 40 43.92 1u8bA 133 45.07 3mn2A 108 45.79 2j0pA 345 46.09 e.62.1.1 137903 3hwrA 318 46.25 1jhfA 202 46.79 a.4.5.2,b.87.1.1 63057,63058 2id3A 225 46.84 a.4.1.9,a.121.1.1 137261,137262 1e8cA 498 48.28 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1qhhB 273 49.70 1b9mA 265 49.93 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 2eyuA 261 50.40 2bjfA 329 52.46 3a5rA 387 52.79 2htjA 81 53.59 a.4.5.73 147397 1w85I 49 56.46 a.9.1.1 114347 1u5tB 169 56.54 a.4.5.54,a.4.5.54 107686,107687 2qwtA 196 56.88 3c2bA 221 57.47 2z7bA 270 57.77 2dqrA 122 58.06 1bl0A 129 60.46 a.4.1.8,a.4.1.8 16053,16054 2d51A 406 60.77 1ldjA 760 63.20 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 2fx0A 201 63.35 a.4.1.9,a.121.1.1 134269,134270 2jj7A 186 63.66 1fseA 74 63.79 a.4.6.2 60000 3mklA 120 64.43 1d7uA 433 64.98 c.67.1.4 34439 2e1nA 138 65.32 3fjyA 364 66.41 3i6dA 470 66.76 1mi3A 322 67.96 c.1.7.1 91274 1resA 43 68.48 a.4.1.2 16023 3br5A 194 70.26 2v57A 190 71.71 1f5qB 252 72.03 a.74.1.1,a.74.1.1 18362,18363 2v9vA 135 72.44 a.4.5.35,a.4.5.35 152809,152810 1t98A 287 73.50 a.4.5.65,a.47.6.1 119196,119197 1yyvA 131 73.73 a.4.5.69 124254 2zivB 351 74.02 2uz1A 563 74.56 1vb5A 276 75.67 c.124.1.5 113604 3kaxA 383 76.54 2fhzA 109 76.68 d.311.1.1 133505 2zcmA 192 79.17 3irrA 67 80.15 2akoA 251 80.21 c.73.1.3 126923 3frkA 373 82.04 3f52A 117 83.31 3h3eA 267 84.40 3kkgA 146 84.87 2we5A 310 85.49 1ustA 93 85.94 a.4.5.13 99884 1qbjA 81 86.28 a.4.5.19 16155 1l9cA 389 86.77 c.3.1.2,d.16.1.3 77815,77816 1htwA 158 87.41 c.37.1.18 71083 3dplC 382 87.76 3gpvA 148 88.67 3br2A 194 89.36 1j9iA 68 89.61 a.6.1.5 71619