# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 1.51e-10 2wv0A 243 2.76e-10 2ek5A 129 4.56e-10 3eetA 274 9.86e-10 3edpA 236 1.38e-09 3ihuA 222 1.99e-09 2hs5A 239 2.00e-09 a.4.5.6,a.78.1.1 147379,147380 3ic7A 126 2.03e-09 2di3A 239 3.29e-09 1hw1A 239 3.48e-09 a.4.5.6,a.78.1.1 16111,18441 3bwgA 239 3.98e-09 a.4.5.6,d.190.1.2 155693,155694 3c7jA 237 4.61e-09 3fmsA 209 9.02e-09 3f8mA 248 1.31e-07 2qq9A 226 8.83e-05 2dtrA 226 0.000130 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fx7A 230 0.000154 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1on2A 142 0.009228 a.4.5.24,a.76.1.1 87103,87104 1ulyA 192 0.01780 a.4.5.58 113297 2fbkA 181 0.02109 a.4.5.28 133247 2qlzA 232 0.02402 2h09A 155 0.02542 3cdhA 155 0.03865 2hr3A 147 0.05061 a.4.5.28 136678 3ecoA 139 0.05533 2rdpA 150 0.06295 3l09A 266 0.06930 3cjnA 162 0.07424 2ev0A 142 0.07428 a.4.5.24,a.76.1.1 132413,132414 3boqA 160 0.08247 1s3jA 155 0.08353 a.4.5.28 98437 2d1hA 109 0.08376 a.4.5.50 131125 3e6mA 161 0.08912 3broA 141 0.09040 a.4.5.28 155517 3fm5A 150 0.09049 3g3zA 145 0.09729 3gflA 146 0.0996 1xd7A 145 0.1036 a.4.5.55 109566 3gfmA 146 0.1044 3k0lA 162 0.1067 3gfjA 146 0.1109 3bj6A 152 0.1145 2nnnA 140 0.1155 2gxgA 146 0.1162 2nyxA 168 0.1215 1lnwA 147 0.1224 a.4.5.28 78104 3bpvA 138 0.1272 2fbiA 142 0.1368 a.4.5.28 133246 1wsuA 124 0.1400 a.4.5.35,a.4.5.35 121245,121246 3f6vA 151 0.1512 3f3xA 144 0.1534 2a61A 145 0.1575 a.4.5.28 126187 2ethA 154 0.1602 a.4.5.28 132358 1lj9A 144 0.1617 a.4.5.28 78035 2bv6A 142 0.1643 a.4.5.28 146218 2oqgA 114 0.1689 3bddA 142 0.1756 2fbhA 146 0.1830 a.4.5.28 133245 1jgsA 138 0.1981 a.4.5.28 66683 2ia2A 265 0.2042 1sfxA 109 0.2179 a.4.5.50 105505 3hsrA 140 0.2226 3f6oA 118 0.2251 2qwwA 154 0.2372 1r1tA 122 0.2391 a.4.5.5 104769 3kfwX 247 0.2500 3cuoA 99 0.2511 1r1uA 106 0.2535 a.4.5.5 104771 2g7uA 257 0.2655 2pexA 153 0.2674 3deuA 166 0.2719 a.4.5.28 157600 1z91A 147 0.2786 a.4.5.28 124736 2ia0A 171 0.3218 3gw2A 108 0.3447 3bjaA 139 0.3450 2e7xA 150 0.3478 1bia 321 0.3497 2cyyA 151 0.3519 a.4.5.32,d.58.4.2 131028,131029 1mkmA 249 0.3559 a.4.5.33,d.110.2.2 79242,79243 3lwfA 159 0.3649 2cfxA 144 0.3872 a.4.5.32,d.58.4.2 130395,130396 1biaA 321 0.3958 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 3e97A 231 0.4099 1u2wA 122 0.4132 a.4.5.5 119487 2o0yA 260 0.4443 2pn6A 150 0.4480 2frhA 127 0.4495 a.4.5.28 133988 1stzA 338 0.4511 a.4.5.51,d.110.2.3 106009,106010 2dbbA 151 0.4589 2fa5A 162 0.4730 2qz8A 149 0.5054 2ivmA 150 0.5078 2cg4A 152 0.5401 a.4.5.32,d.58.4.2 130417,130418 1ub9A 100 0.5946 a.4.5.28 99159 3k69A 162 0.6539 2v79A 135 0.6657 3ctaA 230 0.7078 a.4.5.28,b.43.5.2 156979,156980 2b0lA 102 0.7272 a.4.5.66 127641 3jthA 98 0.7769 3dv8A 220 0.7792 1j5yA 187 0.8437 a.4.5.1,d.94.2.1 71592,71593 2p5vA 162 0.9010 2w25A 150 0.9385 3i4pA 162 0.9560 3bp8A 406 1.017 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2z99A 219 1.227 1ylfA 149 1.295 a.4.5.55 123648 2f2eA 146 1.313 a.4.5.69 132808 3e5xA 250 1.371 1zybA 232 1.477 a.4.5.4,b.82.3.2 125815,125816 2h6cA 232 1.698 a.4.5.4,b.82.3.2 147232,147233 2h6bA 250 1.717 a.4.5.4,b.82.3.2 147228,147229 1lvaA 258 1.801 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1z6rA 406 1.825 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1hkqA 132 1.916 a.4.5.10 83555 2fe3A 145 1.987 2pjpA 121 1.987 2fmyA 220 2.027 1t6sA 162 2.102 a.4.5.60,a.4.5.60 112271,112272 3jw4A 148 2.253 3e6cC 250 2.348 a.4.5.4,b.82.3.2 158038,158039 1hw5A 210 2.381 a.4.5.4,b.82.3.2 16098,28137 1jhgA 101 2.618 a.4.12.1 19009 3d0sA 227 2.780 2gqqA 163 2.789 3gwzA 369 3.073 3dp7A 363 3.139 3b73A 111 3.207 2r3sA 335 3.423 1yg2A 179 3.458 a.4.5.61 116681 1z1dA 103 3.497 a.4.5.16 124351 1sfuA 75 4.061 a.4.5.19 105503 3ezfA 403 4.630 2obpA 96 4.695 a.4.5.71 148718 1q1hA 110 4.726 a.4.5.41 95580 3echA 142 4.868 1y0uA 96 5.069 a.4.5.5 116310 2gauA 232 5.079 a.4.5.4,b.82.3.2 134894,134895 3lstA 348 5.257 1y9qA 192 5.391 a.35.1.8,b.82.1.15 116592,116593 2zdbA 195 5.766 1mzbA 136 6.108 a.4.5.42 91497 2zkzA 99 6.408 3eyyA 145 6.696 2fu4A 83 7.531 2cohA 202 7.985 a.4.5.4,b.82.3.2 130677,130678 2bnmA 198 8.441 a.35.1.3,b.82.1.10 128835,128836 2b5aA 77 9.659 a.35.1.3 127882 2hoeA 380 9.752 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1p4xA 250 10.16 a.4.5.28,a.4.5.28 87784,87785 2w57A 150 10.26 1x19A 359 10.66 2zcwA 202 10.89 1b0nA 111 11.31 a.34.1.1,a.35.1.3 17001,17064 1vb5A 276 11.49 c.124.1.5 113604 3g5gA 99 12.61 3i53A 332 12.62 1y7yA 74 12.89 a.35.1.3 122729 2fswA 107 13.08 a.4.5.69 134042 2e1nA 138 13.35 1tbxA 99 13.47 a.4.5.48 106748 2p8tA 200 13.69 a.4.5.72,d.74.4.2 149315,149316 1adrA 76 13.91 a.35.1.2 17042 2rn7A 108 14.35 2r1jL 68 14.37 a.35.1.2 151525 1utxA 66 14.63 a.35.1.3 108034 2ip2A 334 15.07 2cro 71 15.48 1z7uA 112 15.68 a.4.5.69 124672 3fyaA 99 15.81 1rp3A 239 15.87 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2ebyA 113 17.04 3cuqB 218 17.88 2ictA 94 18.50 a.35.1.3 147605 1sd4A 126 18.75 a.4.5.39 105428 1u5tA 233 18.93 a.4.5.54,a.4.5.54 107684,107685 1tw3A 360 18.94 a.4.5.29,c.66.1.12 107373,107374 3cecA 104 19.05 2hztA 107 19.06 a.4.5.69 147462 3eusA 86 19.33 2heoA 67 20.16 3i71A 68 20.39 2dt5A 211 20.72 a.4.5.38,c.2.1.12 131708,131709 3ivpA 126 20.92 3f6wA 83 20.94 2ppxA 99 22.21 a.35.1.3 149783 1r69 69 22.58 1j9iA 68 23.10 a.6.1.5 71619 1g2hA 61 23.19 a.4.1.12 60224 2jt1A 77 23.19 1r69A 69 24.08 a.35.1.2 17028 1f5qB 252 24.17 a.74.1.1,a.74.1.1 18362,18363 2croA 71 25.06 a.35.1.2 17038 3eqxA 373 26.00 1u8bA 133 27.69 2eyuA 261 27.69 1j75A 67 28.14 a.4.5.19 62673 3majA 382 28.33 3bz6A 183 28.35 a.4.5.75,a.4.5.75 155739,155740 1nogA 177 28.36 a.25.2.2 85923 2id3A 225 30.31 a.4.1.9,a.121.1.1 137261,137262 1b9mA 265 30.37 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 2bgcA 238 30.95 a.4.5.4,b.82.3.3 128458,128459 3c3pA 210 32.51 1iq8A 582 32.68 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 2bcqA 335 32.90 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 1t98A 287 33.22 a.4.5.65,a.47.6.1 119196,119197 2v9vA 135 33.57 a.4.5.35,a.4.5.35 152809,152810 2j5pA 76 34.30 a.4.5.67 138050 1jhfA 202 34.49 a.4.5.2,b.87.1.1 63057,63058 1e6yB 433 36.25 a.89.1.1,d.58.31.2 18535,39453 1resA 43 36.89 a.4.1.2 16023 2qenA 350 37.04 1hstA 90 38.48 a.4.5.13 16140 3ke2A 117 38.73 2bjfA 329 40.22 2fjrA 189 40.86 3b7hA 78 40.86 3df8A 111 42.21 2jn6A 97 42.36 a.4.1.19 148144 1qzzA 374 42.65 a.4.5.29,c.66.1.12 96719,96720 1ej6A 1289 43.04 i.7.1.1 45967 3lsgA 103 44.84 2eq8C 40 45.99 2ah6A 208 46.56 3bhqA 211 48.32 3gaiA 194 48.40 1w5tA 412 48.45 a.4.5.11,c.37.1.20 114255,114256 2dqlA 115 49.79 2ve8A 73 49.80 a.4.5.67 153008 3gahA 194 50.12 3f8bA 116 50.40 2ordA 397 53.56 1qbjA 81 54.47 a.4.5.19 16155 2v7fA 150 55.27 a.4.5.84 152721 3l44A 434 55.95 3gpvA 148 55.98 1wozA 177 56.38 2nt8A 223 56.40 3gajA 187 58.77 1zelA 298 61.22 a.4.5.83,d.377.1.1 145994,145995 3mn2A 108 61.31 2htjA 81 62.24 a.4.5.73 147397 2o38A 120 64.17 a.35.1.13 148568 2g2dA 193 66.25 2zhzA 183 66.41 2g9wA 138 66.65 a.4.5.39 147097 1rioA 98 66.68 a.35.1.2 97513 1wj5A 120 67.78 a.4.5.59 114692 3hhhA 116 68.93 2rkhA 180 69.38 1wvtA 172 70.67 1t0fA 276 72.56 a.4.5.27,c.52.1.16 112195,112196 1l9cA 389 72.67 c.3.1.2,d.16.1.3 77815,77816 3hn2A 312 74.91 3irrA 67 75.75 1r7jA 95 76.62 a.4.5.49 104836 1ufmA 84 76.99 a.4.5.47 107816 2fhzA 109 77.54 d.311.1.1 133505 3hwrA 318 77.58 1zodA 433 77.63 c.67.1.4 125437 2fx0A 201 77.94 a.4.1.9,a.121.1.1 134269,134270 2zmeA 258 78.16 2jj7A 186 78.66 2oi8A 216 78.94 a.4.1.9,a.121.1.1 148778,148779 3e3vA 177 79.19 2fnaA 357 79.41 a.4.5.11,c.37.1.20 133809,133810 3mklA 120 80.04 2g7lA 243 81.71 a.4.1.9,a.121.1.1 134734,134735 2dqrA 122 82.72 1aisB 200 82.89 a.74.1.2,a.74.1.2 18384,18385 3fxqA 305 83.42 3bjbA 207 85.17 1u5tB 169 87.16 a.4.5.54,a.4.5.54 107686,107687 2f07A 197 88.57 2k9mA 130 89.15