# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 2.26e-07 2wv0A 243 3.71e-07 2ek5A 129 7.47e-07 3bwgA 239 9.87e-07 a.4.5.6,d.190.1.2 155693,155694 3ihuA 222 1.21e-06 2hs5A 239 1.30e-06 a.4.5.6,a.78.1.1 147379,147380 3ic7A 126 1.33e-06 1hw1A 239 1.55e-06 a.4.5.6,a.78.1.1 16111,18441 3edpA 236 1.58e-06 2di3A 239 1.67e-06 3eetA 274 1.80e-06 3c7jA 237 2.48e-06 3fmsA 209 3.79e-06 3f8mA 248 6.15e-05 2qq9A 226 0.002152 1fx7A 230 0.004620 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtrA 226 0.005611 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qlzA 232 0.1089 1ulyA 192 0.1837 a.4.5.58 113297 1on2A 142 0.1978 a.4.5.24,a.76.1.1 87103,87104 2h09A 155 0.3029 3l09A 266 0.3891 1xd7A 145 0.5383 a.4.5.55 109566 2ia2A 265 0.5873 3hsrA 140 0.6637 3boqA 160 0.6639 3cjnA 162 0.6707 2bv6A 142 0.6901 a.4.5.28 146218 3ecoA 139 0.7226 3cdhA 155 0.7514 2ev0A 142 0.7980 a.4.5.24,a.76.1.1 132413,132414 3fm5A 150 0.8761 2qwwA 154 0.9746 3broA 141 0.9843 a.4.5.28 155517 2hr3A 147 1.007 a.4.5.28 136678 3k69A 162 1.091 2pexA 153 1.154 2fbkA 181 1.175 a.4.5.28 133247 1z91A 147 1.177 a.4.5.28 124736 2d1hA 109 1.472 a.4.5.50 131125 2rdpA 150 1.484 1s3jA 155 1.488 a.4.5.28 98437 3bj6A 152 1.510 3g3zA 145 1.520 3e97A 231 1.526 1lnwA 147 1.604 a.4.5.28 78104 3gfjA 146 1.606 3gflA 146 1.617 3ctaA 230 1.632 a.4.5.28,b.43.5.2 156979,156980 3gfmA 146 1.674 1j5yA 187 1.725 a.4.5.1,d.94.2.1 71592,71593 1lj9A 144 1.726 a.4.5.28 78035 3bpvA 138 1.728 1sfxA 109 1.732 a.4.5.50 105505 3k0lA 162 1.775 3e6mA 161 1.792 3lwfA 159 1.809 2gxgA 146 1.881 2ethA 154 1.886 a.4.5.28 132358 1wsuA 124 1.904 a.4.5.35,a.4.5.35 121245,121246 3kfwX 247 1.914 2g7uA 257 2.009 2cg4A 152 2.038 a.4.5.32,d.58.4.2 130417,130418 2a61A 145 2.080 a.4.5.28 126187 3f3xA 144 2.118 2nyxA 168 2.140 3bddA 142 2.222 3cuoA 99 2.241 1r1tA 122 2.285 a.4.5.5 104769 2nnnA 140 2.310 1jgsA 138 2.332 a.4.5.28 66683 2fbiA 142 2.345 a.4.5.28 133246 3bjaA 139 2.406 2fbhA 146 2.435 a.4.5.28 133245 1ylfA 149 2.449 a.4.5.55 123648 3deuA 166 2.686 a.4.5.28 157600 3e5xA 250 2.757 2oqgA 114 2.759 3dv8A 220 2.844 3gw2A 108 2.873 1stzA 338 2.899 a.4.5.51,d.110.2.3 106009,106010 1r1uA 106 2.915 a.4.5.5 104771 1u2wA 122 3.130 a.4.5.5 119487 2e7xA 150 3.433 2ia0A 171 3.588 1z6rA 406 3.604 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2dbbA 151 3.677 2qz8A 149 3.729 1ub9A 100 3.749 a.4.5.28 99159 3f6vA 151 4.047 2frhA 127 4.145 a.4.5.28 133988 1zybA 232 4.316 a.4.5.4,b.82.3.2 125815,125816 2pn6A 150 4.409 2o0yA 260 4.591 2cfxA 144 4.742 a.4.5.32,d.58.4.2 130395,130396 2ivmA 150 4.794 3gwzA 369 5.012 2cyyA 151 5.439 a.4.5.32,d.58.4.2 131028,131029 1bia 321 5.503 2gauA 232 5.566 a.4.5.4,b.82.3.2 134894,134895 3f6oA 118 5.587 2fa5A 162 5.761 2b0lA 102 5.893 a.4.5.66 127641 3e6cC 250 6.063 a.4.5.4,b.82.3.2 158038,158039 1biaA 321 6.298 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1mkmA 249 6.395 a.4.5.33,d.110.2.2 79242,79243 2w25A 150 7.042 2zdbA 195 7.297 2h6cA 232 7.691 a.4.5.4,b.82.3.2 147232,147233 1hw5A 210 7.967 a.4.5.4,b.82.3.2 16098,28137 2fmyA 220 8.413 3jthA 98 8.904 3i4pA 162 8.938 2v79A 135 9.412 2pjpA 121 9.96 2z99A 219 9.98 2p5vA 162 10.17 2f2eA 146 10.51 a.4.5.69 132808 3jw4A 148 10.66 3d0sA 227 10.78 1hkqA 132 10.92 a.4.5.10 83555 3echA 142 11.48 3lstA 348 11.65 1yg2A 179 12.13 a.4.5.61 116681 1xnzA 264 12.94 d.127.1.1 115673 2zcwA 202 13.77 1jhgA 101 15.39 a.4.12.1 19009 3jz6A 373 15.50 3dp7A 363 15.69 2h6bA 250 18.51 a.4.5.4,b.82.3.2 147228,147229 1lvaA 258 19.59 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 3i6dA 470 19.71 1t6sA 162 21.58 a.4.5.60,a.4.5.60 112271,112272 3cuqB 218 22.40 2fe3A 145 22.40 3bp8A 406 22.41 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2zkzA 99 22.84 2qenA 350 23.14 1z1dA 103 23.27 a.4.5.16 124351 3i53A 332 23.84 3iwfA 107 25.51 3hn2A 312 25.66 3b73A 111 25.91 1xhcA 367 26.92 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2r3sA 335 30.13 2v8hA 474 34.00 1q1hA 110 34.07 a.4.5.41 95580 1l5aA 436 37.84 c.43.1.2,c.43.1.2 75923,75924 3lfxA 319 37.85 1mi3A 322 38.06 c.1.7.1 91274 2p8tA 200 41.78 a.4.5.72,d.74.4.2 149315,149316 2gqqA 163 42.16 3eyyA 145 42.19 1y0uA 96 42.39 a.4.5.5 116310 2w57A 150 43.52 1ooyA 481 44.19 c.124.1.3,c.124.1.2 93388,93389 2bnmA 198 44.46 a.35.1.3,b.82.1.10 128835,128836 2z7bA 270 44.61 1b0nA 111 45.29 a.34.1.1,a.35.1.3 17001,17064 2j5pA 76 45.30 a.4.5.67 138050 2zmeA 258 45.33 1utxA 66 45.52 a.35.1.3 108034 2ebyA 113 46.80 1y7yA 74 47.50 a.35.1.3 122729 3majA 382 47.75 1mzbA 136 47.89 a.4.5.42 91497 2b5aA 77 48.36 a.35.1.3 127882 2hoeA 380 49.58 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2dqrA 122 49.94 2obpA 96 52.21 a.4.5.71 148718 1c4zA 358 52.97 d.148.1.1 41766 3f6wA 83 53.31 2r1jL 68 53.34 a.35.1.2 151525 2cro 71 54.81 1sfuA 75 55.17 a.4.5.19 105503 2fu4A 83 55.27 1zsxA 347 55.47 3i71A 68 60.60 1p4xA 250 62.51 a.4.5.28,a.4.5.28 87784,87785 3getA 365 62.81 2vprA 207 63.03 1r69 69 63.47 1r69A 69 63.63 a.35.1.2 17028 3ezfA 403 63.70 1tw3A 360 64.45 a.4.5.29,c.66.1.12 107373,107374 2dt5A 211 64.52 a.4.5.38,c.2.1.12 131708,131709 3h3zA 235 65.78 2fjrA 189 66.65 3eusA 86 68.41 3g5gA 99 69.92 2ictA 94 70.58 a.35.1.3 147605 3ivpA 126 70.67 1sd4A 126 71.05 a.4.5.39 105428 3fyaA 99 72.82 1adrA 76 73.16 a.35.1.2 17042 3cecA 104 75.74 2croA 71 77.17 a.35.1.2 17038 1qzzA 374 79.24 a.4.5.29,c.66.1.12 96719,96720 2olnA 397 79.42 2dyuA 334 79.71 2d51A 406 80.45 3h7uA 335 81.37 1nhpA 447 81.78 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2uz1A 563 82.93 1c24A 263 84.78 d.127.1.1 41148 2cvzA 289 86.26 a.100.1.1,c.2.1.6 130890,130891 2heoA 67 87.12 1bm9A 122 89.07 a.4.5.7 16116 2egxA 269 89.12 1pn0A 665 89.91 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920