# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 3.18e-12 2wv0A 243 5.33e-12 2ek5A 129 2.08e-11 3edpA 236 2.82e-11 3ihuA 222 3.58e-11 2hs5A 239 4.17e-11 a.4.5.6,a.78.1.1 147379,147380 3eetA 274 4.22e-11 1hw1A 239 1.06e-10 a.4.5.6,a.78.1.1 16111,18441 3c7jA 237 1.19e-10 3bwgA 239 1.26e-10 a.4.5.6,d.190.1.2 155693,155694 2di3A 239 1.74e-10 3ic7A 126 2.11e-10 3fmsA 209 2.67e-10 3f8mA 248 8.55e-09 2qq9A 226 3.72e-06 1fx7A 230 5.98e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtrA 226 2.41e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1on2A 142 0.004146 a.4.5.24,a.76.1.1 87103,87104 3l09A 266 0.007701 1ulyA 192 0.01040 a.4.5.58 113297 2qlzA 232 0.01476 2h09A 155 0.02210 3cdhA 155 0.02556 3ecoA 139 0.02649 2ev0A 142 0.03076 a.4.5.24,a.76.1.1 132413,132414 3broA 141 0.03728 a.4.5.28 155517 2hr3A 147 0.04314 a.4.5.28 136678 2fbkA 181 0.05142 a.4.5.28 133247 3hsrA 140 0.06605 2rdpA 150 0.06780 3bj6A 152 0.06931 3gflA 146 0.08067 3gfjA 146 0.08167 3bpvA 138 0.08172 1lj9A 144 0.08173 a.4.5.28 78035 3g3zA 145 0.08186 1lnwA 147 0.08226 a.4.5.28 78104 2d1hA 109 0.08231 a.4.5.50 131125 3cjnA 162 0.08285 3gfmA 146 0.08358 1sfxA 109 0.08990 a.4.5.50 105505 1s3jA 155 0.09090 a.4.5.28 98437 3boqA 160 0.09275 2gxgA 146 0.09676 1wsuA 124 0.09888 a.4.5.35,a.4.5.35 121245,121246 3k0lA 162 0.1011 2ethA 154 0.1073 a.4.5.28 132358 2g7uA 257 0.1079 3e97A 231 0.1087 3bddA 142 0.1098 3e6mA 161 0.1107 3f3xA 144 0.1147 3fm5A 150 0.1165 3cuoA 99 0.1173 2a61A 145 0.1253 a.4.5.28 126187 2ia2A 265 0.1333 1xd7A 145 0.1339 a.4.5.55 109566 2nyxA 168 0.1358 1mkmA 249 0.1362 a.4.5.33,d.110.2.2 79242,79243 1jgsA 138 0.1418 a.4.5.28 66683 3bjaA 139 0.1454 1r1tA 122 0.1492 a.4.5.5 104769 2fbiA 142 0.1596 a.4.5.28 133246 2oqgA 114 0.1602 2nnnA 140 0.1605 3ctaA 230 0.1744 a.4.5.28,b.43.5.2 156979,156980 3dv8A 220 0.1840 2qwwA 154 0.1863 1z91A 147 0.1881 a.4.5.28 124736 2pexA 153 0.1949 2fbhA 146 0.1994 a.4.5.28 133245 2o0yA 260 0.1996 1ylfA 149 0.2009 a.4.5.55 123648 1r1uA 106 0.2072 a.4.5.5 104771 3k69A 162 0.2106 1z6rA 406 0.2187 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2bv6A 142 0.2274 a.4.5.28 146218 1u2wA 122 0.2288 a.4.5.5 119487 3kfwX 247 0.2321 3deuA 166 0.2370 a.4.5.28 157600 2qz8A 149 0.2557 2frhA 127 0.2602 a.4.5.28 133988 2ia0A 171 0.2675 1stzA 338 0.2701 a.4.5.51,d.110.2.3 106009,106010 2e7xA 150 0.2706 3f6vA 151 0.2839 3lwfA 159 0.2946 1biaA 321 0.3046 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1ub9A 100 0.3053 a.4.5.28 99159 2cg4A 152 0.3170 a.4.5.32,d.58.4.2 130417,130418 2dbbA 151 0.3206 1lvaA 258 0.3606 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1j5yA 187 0.3743 a.4.5.1,d.94.2.1 71592,71593 2cyyA 151 0.3968 a.4.5.32,d.58.4.2 131028,131029 1bia 321 0.3981 2pn6A 150 0.3987 2ivmA 150 0.4027 2cfxA 144 0.4165 a.4.5.32,d.58.4.2 130395,130396 3gw2A 108 0.4452 3f6oA 118 0.4923 2fa5A 162 0.4926 3bp8A 406 0.4994 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3d0sA 227 0.4995 2f2eA 146 0.5616 a.4.5.69 132808 1zybA 232 0.5815 a.4.5.4,b.82.3.2 125815,125816 1hw5A 210 0.6360 a.4.5.4,b.82.3.2 16098,28137 3e5xA 250 0.6535 2w25A 150 0.7045 3e6cC 250 0.7053 a.4.5.4,b.82.3.2 158038,158039 2z99A 219 0.7661 3jthA 98 0.8311 2b0lA 102 0.8449 a.4.5.66 127641 2cohA 202 0.9499 a.4.5.4,b.82.3.2 130677,130678 2fmyA 220 0.999 2pjpA 121 1.053 2v79A 135 1.086 3i4pA 162 1.188 3ezfA 403 1.214 2p5vA 162 1.225 2zcwA 202 1.250 3jw4A 148 1.262 2h6cA 232 1.277 a.4.5.4,b.82.3.2 147232,147233 2gauA 232 1.345 a.4.5.4,b.82.3.2 134894,134895 1jhgA 101 1.373 a.4.12.1 19009 2zdbA 195 1.399 2h6bA 250 1.401 a.4.5.4,b.82.3.2 147228,147229 1yg2A 179 1.784 a.4.5.61 116681 1hkqA 132 2.322 a.4.5.10 83555 2zkzA 99 2.660 2r3sA 335 2.817 2fe3A 145 3.121 2dt5A 211 3.717 a.4.5.38,c.2.1.12 131708,131709 3dp7A 363 3.827 1e6yB 433 4.034 a.89.1.1,d.58.31.2 18535,39453 3lstA 348 4.085 1t6sA 162 4.457 a.4.5.60,a.4.5.60 112271,112272 3b73A 111 4.587 2hoeA 380 4.709 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3echA 142 4.914 2gqqA 163 4.932 1q1hA 110 5.239 a.4.5.41 95580 3gwzA 369 5.355 2qenA 350 6.204 1y9qA 192 6.279 a.35.1.8,b.82.1.15 116592,116593 3i53A 332 6.471 3cuqB 218 6.791 1y0uA 96 8.591 a.4.5.5 116310 1z1dA 103 8.617 a.4.5.16 124351 1xesA 413 8.674 2ebyA 113 8.831 1utxA 66 8.898 a.35.1.3 108034 1b0nA 111 8.898 a.34.1.1,a.35.1.3 17001,17064 2zy5A 546 8.999 3eusA 86 9.037 2ip2A 334 9.303 3majA 382 9.423 1y7yA 74 9.488 a.35.1.3 122729 2bnmA 198 9.771 a.35.1.3,b.82.1.10 128835,128836 1mzbA 136 10.23 a.4.5.42 91497 2b5aA 77 10.46 a.35.1.3 127882 2r1jL 68 10.80 a.35.1.2 151525 2fu4A 83 10.82 2cro 71 11.08 2p8tA 200 11.18 a.4.5.72,d.74.4.2 149315,149316 3f6wA 83 12.10 3i71A 68 12.42 1p4xA 250 13.20 a.4.5.28,a.4.5.28 87784,87785 2obpA 96 13.26 a.4.5.71 148718 1r69 69 13.27 1sfuA 75 13.31 a.4.5.19 105503 2bgcA 238 13.61 a.4.5.4,b.82.3.3 128458,128459 1r69A 69 13.68 a.35.1.2 17028 1x19A 359 13.86 3iwfA 107 14.26 1qzzA 374 14.72 a.4.5.29,c.66.1.12 96719,96720 2fjrA 189 15.56 3ivpA 126 16.20 2ictA 94 16.20 a.35.1.3 147605 3lmmA 583 16.30 3cecA 104 16.72 3eyyA 145 17.21 2zmeA 258 17.27 3g5gA 99 18.05 3fyaA 99 18.18 1tw3A 360 18.38 a.4.5.29,c.66.1.12 107373,107374 2croA 71 18.41 a.35.1.2 17038 1i88A 389 18.51 c.95.1.2,c.95.1.2 66070,66071 1sd4A 126 18.85 a.4.5.39 105428 2jn6A 97 20.17 a.4.1.19 148144 2egxA 269 20.94 2heoA 67 21.00 2o3fA 111 21.62 a.4.1.20 148573 1ej6A 1289 21.63 i.7.1.1 45967 1t0fA 276 21.99 a.4.5.27,c.52.1.16 112195,112196 3h3zA 235 22.32 1adrA 76 22.87 a.35.1.2 17042 1j75A 67 22.96 a.4.5.19 62673 2ppxA 99 23.92 a.35.1.3 149783 1z7uA 112 24.21 a.4.5.69 124672 1e8cA 498 24.77 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2fswA 107 25.06 a.4.5.69 134042 2w57A 150 26.13 2jt1A 77 26.57 1hstA 90 27.41 a.4.5.13 16140 1rp3A 239 28.76 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2rn7A 108 29.08 2bjfA 329 29.93 3hn2A 312 31.15 1g2hA 61 31.63 a.4.1.12 60224 3ez7A 398 33.62 2eq8C 40 34.17 3lsgA 103 34.39 1tbxA 99 35.80 a.4.5.48 106748 1vb5A 276 36.69 c.124.1.5 113604 3b7hA 78 38.72 1iq8A 582 38.77 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1u8bA 133 40.42 3a5rA 387 42.84 3eqxA 373 42.92 3i6dA 470 44.76 1jhfA 202 44.97 a.4.5.2,b.87.1.1 63057,63058 3mn2A 108 45.73 1zejA 293 45.96 2v7fA 150 47.28 a.4.5.84 152721 2j5pA 76 47.48 a.4.5.67 138050 3bz6A 183 48.96 a.4.5.75,a.4.5.75 155739,155740 2dqrA 122 52.08 3egoA 307 52.88 3g17A 294 53.70 2d51A 406 53.80 2z7bA 270 54.09 3mklA 120 56.06 3hwrA 318 56.70 2g9wA 138 57.81 a.4.5.39 147097 2uz1A 563 57.86 2fnaA 357 58.05 a.4.5.11,c.37.1.20 133809,133810 1d7uA 433 58.15 c.67.1.4 34439 2fx0A 201 58.36 a.4.1.9,a.121.1.1 134269,134270 2fhzA 109 59.31 d.311.1.1 133505 1w5tA 412 61.82 a.4.5.11,c.37.1.20 114255,114256 1b9mA 265 61.88 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1ldjA 760 63.05 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 2hztA 107 65.53 a.4.5.69 147462 2akoA 251 67.77 c.73.1.3 126923 3hhhA 116 68.31 3c2bA 221 69.05 1qbjA 81 70.04 a.4.5.19 16155 2bcqA 335 70.48 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 3frkA 373 73.57 1w85I 49 73.84 a.9.1.1 114347 1bl0A 129 74.07 a.4.1.8,a.4.1.8 16053,16054 2htjA 81 74.62 a.4.5.73 147397 1rioA 98 75.33 a.35.1.2 97513 1u0mA 382 76.69 c.95.1.2,c.95.1.2 107557,107558 3f8bA 116 76.91 1f5qB 252 77.83 a.74.1.1,a.74.1.1 18362,18363 2k9mA 130 81.20 1bm9A 122 81.27 a.4.5.7 16116 2jj7A 186 81.48 2eyuA 261 83.69 1aoyA 78 86.07 a.4.5.3 16087 3irrA 67 86.83 1ufmA 84 87.63 a.4.5.47 107816 1resA 43 87.66 a.4.1.2 16023 3kaxA 383 88.09 3ke2A 117 88.72 1u5tB 169 89.52 a.4.5.54,a.4.5.54 107686,107687 2hq2A 354 89.81 e.62.1.1 136656