# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 4.70e-12 2wv0A 243 1.01e-11 2ek5A 129 2.07e-11 3edpA 236 4.67e-11 3ihuA 222 6.24e-11 3eetA 274 6.82e-11 2hs5A 239 8.18e-11 a.4.5.6,a.78.1.1 147379,147380 3ic7A 126 8.54e-11 3c7jA 237 1.20e-10 1hw1A 239 1.51e-10 a.4.5.6,a.78.1.1 16111,18441 3bwgA 239 1.80e-10 a.4.5.6,d.190.1.2 155693,155694 2di3A 239 2.72e-10 3fmsA 209 4.27e-10 3f8mA 248 1.51e-08 2qq9A 226 6.61e-06 1fx7A 230 9.50e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtrA 226 2.98e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1on2A 142 0.009554 a.4.5.24,a.76.1.1 87103,87104 3l09A 266 0.00996 1ulyA 192 0.01217 a.4.5.58 113297 2qlzA 232 0.02059 2fbkA 181 0.02732 a.4.5.28 133247 2h09A 155 0.03299 3cdhA 155 0.04370 2hr3A 147 0.04579 a.4.5.28 136678 2ev0A 142 0.04820 a.4.5.24,a.76.1.1 132413,132414 3ecoA 139 0.05218 3broA 141 0.06255 a.4.5.28 155517 3hsrA 140 0.09756 2rdpA 150 0.09821 3boqA 160 0.1017 3bpvA 138 0.1041 3cjnA 162 0.1172 3k0lA 162 0.1183 3e6mA 161 0.1214 3fm5A 150 0.1277 1lnwA 147 0.1321 a.4.5.28 78104 3bj6A 152 0.1324 2nnnA 140 0.1341 2ethA 154 0.1350 a.4.5.28 132358 3bjaA 139 0.1351 3g3zA 145 0.1393 1s3jA 155 0.1422 a.4.5.28 98437 3kfwX 247 0.1450 3gfjA 146 0.1453 3gflA 146 0.1469 1lj9A 144 0.1489 a.4.5.28 78035 3gfmA 146 0.1489 2d1hA 109 0.1567 a.4.5.50 131125 3bddA 142 0.1584 1z6rA 406 0.1586 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1sfxA 109 0.1616 a.4.5.50 105505 2pexA 153 0.1620 2bv6A 142 0.1622 a.4.5.28 146218 1xd7A 145 0.1637 a.4.5.55 109566 1jgsA 138 0.1647 a.4.5.28 66683 3f3xA 144 0.1728 2nyxA 168 0.1743 2gxgA 146 0.1823 3cuoA 99 0.1852 2a61A 145 0.1915 a.4.5.28 126187 2fbiA 142 0.1919 a.4.5.28 133246 1z91A 147 0.2047 a.4.5.28 124736 2qwwA 154 0.2074 3deuA 166 0.2106 a.4.5.28 157600 1wsuA 124 0.2163 a.4.5.35,a.4.5.35 121245,121246 1mkmA 249 0.2314 a.4.5.33,d.110.2.2 79242,79243 2g7uA 257 0.2477 2oqgA 114 0.2508 1r1tA 122 0.2535 a.4.5.5 104769 1biaA 321 0.2753 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2ia2A 265 0.2963 3e97A 231 0.3080 2ia0A 171 0.3303 2cg4A 152 0.3618 a.4.5.32,d.58.4.2 130417,130418 2o0yA 260 0.3670 3bp8A 406 0.3727 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3f6oA 118 0.3737 3ctaA 230 0.3781 a.4.5.28,b.43.5.2 156979,156980 2fbhA 146 0.3791 a.4.5.28 133245 1u2wA 122 0.3811 a.4.5.5 119487 3f6vA 151 0.4005 1r1uA 106 0.4014 a.4.5.5 104771 1ub9A 100 0.4016 a.4.5.28 99159 1bia 321 0.4096 2e7xA 150 0.4125 3dv8A 220 0.4267 2cfxA 144 0.4370 a.4.5.32,d.58.4.2 130395,130396 2ivmA 150 0.4480 2qz8A 149 0.4545 2frhA 127 0.4637 a.4.5.28 133988 3lwfA 159 0.4684 1ylfA 149 0.4798 a.4.5.55 123648 2cyyA 151 0.4968 a.4.5.32,d.58.4.2 131028,131029 3k69A 162 0.5840 1stzA 338 0.5885 a.4.5.51,d.110.2.3 106009,106010 2pn6A 150 0.6428 2dbbA 151 0.6483 1zybA 232 0.6851 a.4.5.4,b.82.3.2 125815,125816 3gw2A 108 0.7109 1lvaA 258 0.8347 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2w25A 150 0.8411 2fa5A 162 0.8810 3e5xA 250 0.9087 2gqqA 163 0.9742 1hw5A 210 0.9757 a.4.5.4,b.82.3.2 16098,28137 2f2eA 146 0.9841 a.4.5.69 132808 3d0sA 227 1.082 3jthA 98 1.169 1j5yA 187 1.240 a.4.5.1,d.94.2.1 71592,71593 2pjpA 121 1.286 3jw4A 148 1.298 2p5vA 162 1.337 2b0lA 102 1.509 a.4.5.66 127641 2z99A 219 1.551 3e6cC 250 1.623 a.4.5.4,b.82.3.2 158038,158039 3i4pA 162 1.725 1yg2A 179 1.876 a.4.5.61 116681 3ezfA 403 1.951 2v79A 135 1.985 2cohA 202 2.281 a.4.5.4,b.82.3.2 130677,130678 1hkqA 132 2.473 a.4.5.10 83555 2h6cA 232 2.517 a.4.5.4,b.82.3.2 147232,147233 2zdbA 195 2.766 2zcwA 202 2.891 1jhgA 101 3.088 a.4.12.1 19009 3ez7A 398 3.310 2gauA 232 3.608 a.4.5.4,b.82.3.2 134894,134895 2fmyA 220 4.055 3b73A 111 4.084 2zkzA 99 4.384 2h6bA 250 4.481 a.4.5.4,b.82.3.2 147228,147229 3echA 142 4.735 1e6yB 433 4.745 a.89.1.1,d.58.31.2 18535,39453 2zy5A 546 5.593 2hoeA 380 5.834 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1q1hA 110 5.848 a.4.5.41 95580 3dp7A 363 5.921 2fe3A 145 6.004 2qenA 350 6.201 3lstA 348 7.890 1t6sA 162 8.349 a.4.5.60,a.4.5.60 112271,112272 2ebyA 113 9.066 2r3sA 335 10.20 1z1dA 103 10.52 a.4.5.16 124351 1y9qA 192 11.41 a.35.1.8,b.82.1.15 116592,116593 2dt5A 211 11.65 a.4.5.38,c.2.1.12 131708,131709 1vb5A 276 12.20 c.124.1.5 113604 3i53A 332 12.22 3majA 382 12.64 1mzbA 136 12.92 a.4.5.42 91497 3i71A 68 14.05 3gwzA 369 14.17 3eusA 86 14.37 3cuqB 218 14.49 2p8tA 200 14.72 a.4.5.72,d.74.4.2 149315,149316 1b0nA 111 15.31 a.34.1.1,a.35.1.3 17001,17064 2fu4A 83 15.57 1x19A 359 16.91 1utxA 66 17.00 a.35.1.3 108034 2fjrA 189 17.37 2heoA 67 17.56 2b5aA 77 17.96 a.35.1.3 127882 1p4xA 250 18.42 a.4.5.28,a.4.5.28 87784,87785 2r1jL 68 18.94 a.35.1.2 151525 2egxA 269 19.36 1sd4A 126 19.68 a.4.5.39 105428 1y7yA 74 20.05 a.35.1.3 122729 3f6wA 83 20.11 2bnmA 198 20.22 a.35.1.3,b.82.1.10 128835,128836 2cro 71 20.29 1xesA 413 20.53 1j75A 67 20.70 a.4.5.19 62673 2obpA 96 21.60 a.4.5.71 148718 2ip2A 334 21.99 1t0fA 276 23.45 a.4.5.27,c.52.1.16 112195,112196 3fyaA 99 24.57 3g5gA 99 24.67 2ictA 94 24.73 a.35.1.3 147605 2fswA 107 24.97 a.4.5.69 134042 1ldjA 760 25.10 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 2zmeA 258 26.07 1sfuA 75 26.63 a.4.5.19 105503 2bgcA 238 26.69 a.4.5.4,b.82.3.3 128458,128459 3cecA 104 26.80 3eyyA 145 27.78 1y0uA 96 29.25 a.4.5.5 116310 1r69 69 30.86 2hztA 107 30.98 a.4.5.69 147462 1r69A 69 31.46 a.35.1.2 17028 1ej6A 1289 32.32 i.7.1.1 45967 1g2hA 61 32.60 a.4.1.12 60224 1i88A 389 33.58 c.95.1.2,c.95.1.2 66070,66071 3hn2A 312 33.68 3eqxA 373 34.58 1z7uA 112 34.62 a.4.5.69 124672 3iwfA 107 35.06 2fnaA 357 35.20 a.4.5.11,c.37.1.20 133809,133810 2rn7A 108 35.82 2ppxA 99 36.04 a.35.1.3 149783 1tw3A 360 37.00 a.4.5.29,c.66.1.12 107373,107374 2bjfA 329 38.43 2hq2A 354 38.57 e.62.1.1 136656 3h3zA 235 38.65 1qzzA 374 41.21 a.4.5.29,c.66.1.12 96719,96720 2croA 71 41.98 a.35.1.2 17038 2vprA 207 42.14 2jn6A 97 43.10 a.4.1.19 148144 1hstA 90 43.17 a.4.5.13 16140 2w57A 150 43.28 1u5tA 233 44.08 a.4.5.54,a.4.5.54 107684,107685 3hhhA 116 44.10 3bz6A 183 44.15 a.4.5.75,a.4.5.75 155739,155740 2o3fA 111 44.19 a.4.1.20 148573 3lmmA 583 44.49 1u5tB 169 44.70 a.4.5.54,a.4.5.54 107686,107687 1rp3A 239 45.12 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2v7fA 150 45.53 a.4.5.84 152721 2g9wA 138 46.25 a.4.5.39 147097 2jt1A 77 46.77 1adrA 76 47.08 a.35.1.2 17042 3ivpA 126 47.66 1bl0A 129 48.59 a.4.1.8,a.4.1.8 16053,16054 3c3pA 210 50.07 1yyvA 131 52.31 a.4.5.69 124254 1tbxA 99 53.62 a.4.5.48 106748 2htjA 81 55.18 a.4.5.73 147397 1resA 43 56.50 a.4.1.2 16023 3b7hA 78 59.81 2eq8C 40 61.71 2uz1A 563 63.86 1s6lA 212 64.71 a.4.5.79,d.357.1.2 145773,145774 3fspA 369 64.89 1yj8A 375 64.96 3lsgA 103 66.31 3mn2A 108 67.31 1e8cA 498 70.57 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 3f8bA 116 71.27 2z7bA 270 72.91 1jhfA 202 74.63 a.4.5.2,b.87.1.1 63057,63058 1j9iA 68 76.07 a.6.1.5 71619 1iq8A 582 76.09 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1x0vA 354 76.40 3i6dA 470 76.53 1u8bA 133 77.27 1d7uA 433 77.31 c.67.1.4 34439 3l44A 434 78.32 2j5pA 76 79.56 a.4.5.67 138050 2eyuA 261 81.86 3egoA 307 81.87 2j0pA 345 83.39 e.62.1.1 137903 2qwtA 196 84.88 2bcqA 335 85.34 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 3ilxA 143 85.67 1t98A 287 86.18 a.4.5.65,a.47.6.1 119196,119197 3dplC 382 88.25 2d51A 406 88.50 2rkhA 180 89.89