# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 8.64e-13 2wv0A 243 2.05e-12 2ek5A 129 5.43e-12 3edpA 236 1.28e-11 3ic7A 126 1.65e-11 3eetA 274 1.66e-11 3ihuA 222 1.75e-11 3c7jA 237 2.75e-11 2hs5A 239 2.79e-11 a.4.5.6,a.78.1.1 147379,147380 1hw1A 239 4.68e-11 a.4.5.6,a.78.1.1 16111,18441 3bwgA 239 4.75e-11 a.4.5.6,d.190.1.2 155693,155694 2di3A 239 8.36e-11 3fmsA 209 9.85e-11 3f8mA 248 3.39e-09 2qq9A 226 2.38e-06 1fx7A 230 4.04e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtrA 226 1.51e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1on2A 142 0.004220 a.4.5.24,a.76.1.1 87103,87104 3l09A 266 0.004892 1ulyA 192 0.006115 a.4.5.58 113297 2h09A 155 0.01153 2ev0A 142 0.01804 a.4.5.24,a.76.1.1 132413,132414 2hr3A 147 0.01812 a.4.5.28 136678 3cdhA 155 0.02026 2qlzA 232 0.02656 2fbkA 181 0.02716 a.4.5.28 133247 3ecoA 139 0.02868 3broA 141 0.03288 a.4.5.28 155517 3hsrA 140 0.03642 2rdpA 150 0.04330 2d1hA 109 0.04637 a.4.5.50 131125 3e6mA 161 0.05061 3cjnA 162 0.05062 1z6rA 406 0.05101 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3g3zA 145 0.05347 2nnnA 140 0.05486 3bj6A 152 0.05651 1s3jA 155 0.05668 a.4.5.28 98437 1lnwA 147 0.05724 a.4.5.28 78104 3bpvA 138 0.05828 2pexA 153 0.06035 1sfxA 109 0.06170 a.4.5.50 105505 3bddA 142 0.06271 1jgsA 138 0.06420 a.4.5.28 66683 3gfjA 146 0.06538 1xd7A 145 0.06559 a.4.5.55 109566 3fm5A 150 0.06740 3gflA 146 0.07213 2nyxA 168 0.07267 2ethA 154 0.07356 a.4.5.28 132358 2fbiA 142 0.07667 a.4.5.28 133246 3k0lA 162 0.07767 3gfmA 146 0.08105 3f3xA 144 0.08242 1lj9A 144 0.08356 a.4.5.28 78035 3boqA 160 0.08632 2a61A 145 0.09305 a.4.5.28 126187 3cuoA 99 0.09412 2gxgA 146 0.09426 2qwwA 154 0.09498 3deuA 166 0.1031 a.4.5.28 157600 3kfwX 247 0.1078 3e97A 231 0.1117 1wsuA 124 0.1120 a.4.5.35,a.4.5.35 121245,121246 3bjaA 139 0.1124 1biaA 321 0.1186 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 3lwfA 159 0.1191 1bia 321 0.1222 2g7uA 257 0.1266 1r1tA 122 0.1279 a.4.5.5 104769 1z91A 147 0.1282 a.4.5.28 124736 1mkmA 249 0.1293 a.4.5.33,d.110.2.2 79242,79243 3bp8A 406 0.1379 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2bv6A 142 0.1460 a.4.5.28 146218 2e7xA 150 0.1494 2ia0A 171 0.1577 3k69A 162 0.1626 3dv8A 220 0.1710 1ub9A 100 0.1733 a.4.5.28 99159 2cg4A 152 0.1765 a.4.5.32,d.58.4.2 130417,130418 1r1uA 106 0.1800 a.4.5.5 104771 2oqgA 114 0.1813 1u2wA 122 0.1859 a.4.5.5 119487 2fbhA 146 0.1953 a.4.5.28 133245 1ylfA 149 0.1978 a.4.5.55 123648 3f6oA 118 0.2047 2cfxA 144 0.2151 a.4.5.32,d.58.4.2 130395,130396 3f6vA 151 0.2171 2ia2A 265 0.2172 3ctaA 230 0.2220 a.4.5.28,b.43.5.2 156979,156980 2ivmA 150 0.2648 3gw2A 108 0.2680 2cyyA 151 0.2691 a.4.5.32,d.58.4.2 131028,131029 2qz8A 149 0.2856 2pn6A 150 0.2971 2dbbA 151 0.3286 2f2eA 146 0.3371 a.4.5.69 132808 2o0yA 260 0.3382 1stzA 338 0.3382 a.4.5.51,d.110.2.3 106009,106010 1zybA 232 0.3539 a.4.5.4,b.82.3.2 125815,125816 2frhA 127 0.3727 a.4.5.28 133988 2fa5A 162 0.3988 3jthA 98 0.4440 2w25A 150 0.4888 1lvaA 258 0.5027 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1j5yA 187 0.5282 a.4.5.1,d.94.2.1 71592,71593 3e5xA 250 0.5527 2p5vA 162 0.5877 2b0lA 102 0.5935 a.4.5.66 127641 3e6cC 250 0.5960 a.4.5.4,b.82.3.2 158038,158039 3d0sA 227 0.6181 1hw5A 210 0.7092 a.4.5.4,b.82.3.2 16098,28137 3jw4A 148 0.7297 2gqqA 163 0.7626 2z99A 219 0.7897 3i4pA 162 0.8195 2zcwA 202 1.000 2cohA 202 1.023 a.4.5.4,b.82.3.2 130677,130678 2zdbA 195 1.108 2v79A 135 1.220 1yg2A 179 1.250 a.4.5.61 116681 3ezfA 403 1.251 2pjpA 121 1.270 1jhgA 101 1.327 a.4.12.1 19009 2gauA 232 1.486 a.4.5.4,b.82.3.2 134894,134895 2h6bA 250 1.518 a.4.5.4,b.82.3.2 147228,147229 2h6cA 232 1.735 a.4.5.4,b.82.3.2 147232,147233 2fmyA 220 1.915 3b73A 111 2.083 3echA 142 2.442 2dt5A 211 2.462 a.4.5.38,c.2.1.12 131708,131709 1q1hA 110 2.724 a.4.5.41 95580 2fe3A 145 2.797 1hkqA 132 2.932 a.4.5.10 83555 3ez7A 398 3.019 2hoeA 380 3.357 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2zy5A 546 3.567 2zkzA 99 3.751 3dp7A 363 3.777 2r3sA 335 3.868 3majA 382 4.313 2qenA 350 4.529 3lstA 348 4.565 1t6sA 162 5.434 a.4.5.60,a.4.5.60 112271,112272 1y9qA 192 5.579 a.35.1.8,b.82.1.15 116592,116593 3gwzA 369 5.730 1e6yB 433 5.856 a.89.1.1,d.58.31.2 18535,39453 3eusA 86 5.961 2p8tA 200 6.492 a.4.5.72,d.74.4.2 149315,149316 2ebyA 113 6.515 1b0nA 111 6.521 a.34.1.1,a.35.1.3 17001,17064 1x19A 359 6.555 2fjrA 189 6.602 1utxA 66 6.930 a.35.1.3 108034 3i53A 332 6.936 2bnmA 198 7.283 a.35.1.3,b.82.1.10 128835,128836 3cuqB 218 7.392 2b5aA 77 7.596 a.35.1.3 127882 3i71A 68 7.670 2obpA 96 8.242 a.4.5.71 148718 1vb5A 276 8.413 c.124.1.5 113604 1xesA 413 8.681 2heoA 67 8.785 2cro 71 8.863 3f6wA 83 8.952 1y7yA 74 9.042 a.35.1.3 122729 1mzbA 136 9.199 a.4.5.42 91497 1y0uA 96 9.511 a.4.5.5 116310 2fu4A 83 9.567 1j75A 67 9.97 a.4.5.19 62673 3g5gA 99 10.55 1t0fA 276 10.63 a.4.5.27,c.52.1.16 112195,112196 3fyaA 99 11.10 3ivpA 126 11.14 3h3zA 235 11.42 2ictA 94 11.48 a.35.1.3 147605 2r1jL 68 12.07 a.35.1.2 151525 1z1dA 103 12.30 a.4.5.16 124351 1sfuA 75 13.29 a.4.5.19 105503 2ppxA 99 14.71 a.35.1.3 149783 1i88A 389 15.39 c.95.1.2,c.95.1.2 66070,66071 3eyyA 145 15.59 1p4xA 250 15.63 a.4.5.28,a.4.5.28 87784,87785 3cecA 104 15.70 1r69 69 15.78 2croA 71 15.89 a.35.1.2 17038 2bgcA 238 16.19 a.4.5.4,b.82.3.3 128458,128459 1r69A 69 16.22 a.35.1.2 17028 3hn2A 312 16.26 2egxA 269 16.58 1tw3A 360 16.99 a.4.5.29,c.66.1.12 107373,107374 2fswA 107 19.52 a.4.5.69 134042 1adrA 76 20.14 a.35.1.2 17042 2zmeA 258 20.18 2w57A 150 21.43 2hq2A 354 21.45 e.62.1.1 136656 1sd4A 126 22.44 a.4.5.39 105428 1hstA 90 22.89 a.4.5.13 16140 2ip2A 334 22.96 2htjA 81 23.00 a.4.5.73 147397 2hztA 107 23.13 a.4.5.69 147462 3eqxA 373 23.19 2jt1A 77 23.28 3lmmA 583 23.44 1qzzA 374 24.59 a.4.5.29,c.66.1.12 96719,96720 2g9wA 138 24.61 a.4.5.39 147097 1g2hA 61 24.71 a.4.1.12 60224 1rp3A 239 25.24 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1u5tA 233 26.21 a.4.5.54,a.4.5.54 107684,107685 1z7uA 112 26.47 a.4.5.69 124672 3iwfA 107 26.70 2v7fA 150 27.07 a.4.5.84 152721 2rn7A 108 29.43 2eq8C 40 29.95 3hhhA 116 30.72 3b7hA 78 32.09 1jhfA 202 32.67 a.4.5.2,b.87.1.1 63057,63058 3mn2A 108 33.55 1ej6A 1289 34.35 i.7.1.1 45967 3bz6A 183 35.01 a.4.5.75,a.4.5.75 155739,155740 2bjfA 329 36.21 3lsgA 103 37.30 2j5pA 76 37.39 a.4.5.67 138050 1j9iA 68 37.99 a.6.1.5 71619 2d51A 406 40.53 1u5tB 169 40.58 a.4.5.54,a.4.5.54 107686,107687 2jn6A 97 40.65 a.4.1.19 148144 1s6lA 212 41.42 a.4.5.79,d.357.1.2 145773,145774 1ldjA 760 42.42 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1yyvA 131 44.45 a.4.5.69 124254 2z7bA 270 45.49 3i6dA 470 46.13 1tbxA 99 46.43 a.4.5.48 106748 3f8bA 116 47.81 3g17A 294 48.24 3egoA 307 48.46 2fnaA 357 48.51 a.4.5.11,c.37.1.20 133809,133810 1resA 43 49.55 a.4.1.2 16023 1bl0A 129 50.43 a.4.1.8,a.4.1.8 16053,16054 1b9mA 265 50.62 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 2vprA 207 51.36 2o3fA 111 52.24 a.4.1.20 148573 1gsaA 316 52.59 c.30.1.3,d.142.1.1 31718,41477 3irrA 67 52.71 1w85I 49 52.87 a.9.1.1 114347 3a5rA 387 53.33 3fx3A 237 53.62 3ke2A 117 54.53 3hwrA 318 56.02 2e1nA 138 56.07 1iq8A 582 56.22 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1t98A 287 56.23 a.4.5.65,a.47.6.1 119196,119197 3c2bA 221 56.23 3mklA 120 56.99 2eyuA 261 57.39 1u8bA 133 58.38 2jj7A 186 59.59 1d7uA 433 60.20 c.67.1.4 34439 1qbjA 81 60.84 a.4.5.19 16155 1ufmA 84 60.98 a.4.5.47 107816 2fx0A 201 61.49 a.4.1.9,a.121.1.1 134269,134270 1f5qB 252 61.69 a.74.1.1,a.74.1.1 18362,18363 3l44A 434 63.04 1yj8A 375 63.47 2j0pA 345 66.04 e.62.1.1 137903 2akoA 251 70.40 c.73.1.3 126923 1r71A 178 71.67 a.4.14.1 104823 1qhhB 273 72.05 3gpvA 148 72.58 2id3A 225 72.63 a.4.1.9,a.121.1.1 137261,137262 1e8cA 498 73.04 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 3f52A 117 73.36 3df8A 111 73.95 2qwtA 196 74.00 2ve8A 73 74.51 a.4.5.67 153008 2uz1A 563 74.99 3c3pA 210 75.47 2bcqA 335 75.50 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 1w5tA 412 76.63 a.4.5.11,c.37.1.20 114255,114256 2dqrA 122 80.03 1zejA 293 81.02 3fiwA 211 82.61 2h27A 73 82.98 a.4.13.2 135993 1rzsA 61 84.69 a.35.1.2 105139 1u9tA 354 85.74 e.62.1.1 119651 2rkhA 180 86.13 3h0dA 155 87.56 3hefA 143 87.60 3gbgA 276 88.15 3br5A 194 88.20 1x0vA 354 89.26