# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 0.000233 2ek5A 129 0.000337 2wv0A 243 0.000781 3eetA 274 0.002551 3edpA 236 0.003370 1hw1A 239 0.004293 a.4.5.6,a.78.1.1 16111,18441 2di3A 239 0.006618 3ihuA 222 0.007134 3fmsA 209 0.007516 2hs5A 239 0.007945 a.4.5.6,a.78.1.1 147379,147380 3bwgA 239 0.01173 a.4.5.6,d.190.1.2 155693,155694 3c7jA 237 0.02397 3f8mA 248 0.03471 3ic7A 126 0.06891 1fx7A 230 0.9175 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 0.9345 3lwfA 159 1.470 2dtrA 226 1.853 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2oqgA 114 2.501 2hr3A 147 3.742 a.4.5.28 136678 1xd7A 145 3.836 a.4.5.55 109566 3broA 141 3.878 a.4.5.28 155517 3ecoA 139 3.921 3f6oA 118 3.975 2gxgA 146 4.263 2ethA 154 5.287 a.4.5.28 132358 1s3jA 155 5.300 a.4.5.28 98437 2rdpA 150 5.331 1lnwA 147 5.500 a.4.5.28 78104 2nnnA 140 5.662 3k69A 162 5.744 3gfjA 146 5.750 3k0lA 162 5.948 3l09A 266 6.411 3cjnA 162 6.838 3f6vA 151 7.018 3gflA 146 7.091 3ctaA 230 7.243 a.4.5.28,b.43.5.2 156979,156980 2fbiA 142 7.439 a.4.5.28 133246 3bddA 142 7.514 2obpA 96 7.515 a.4.5.71 148718 2a61A 145 7.763 a.4.5.28 126187 1tw3A 360 7.945 a.4.5.29,c.66.1.12 107373,107374 2r3sA 335 7.961 2fbhA 146 8.195 a.4.5.28 133245 3cdhA 155 8.420 2nyxA 168 8.506 3gfmA 146 8.826 1ulyA 192 9.100 a.4.5.58 113297 2ip2A 334 9.454 3e6mA 161 9.95 1t6sA 162 10.07 a.4.5.60,a.4.5.60 112271,112272 3g3zA 145 10.08 1sd4A 126 10.34 a.4.5.39 105428 1mkmA 249 10.53 a.4.5.33,d.110.2.2 79242,79243 3deuA 166 11.13 a.4.5.28 157600 2fa5A 162 11.42 1sfxA 109 11.77 a.4.5.50 105505 3dp7A 363 11.82 3bpvA 138 11.96 1r1uA 106 12.18 a.4.5.5 104771 3bj6A 152 12.78 1ylfA 149 13.12 a.4.5.55 123648 1on2A 142 13.36 a.4.5.24,a.76.1.1 87103,87104 3hsrA 140 14.38 2p5vA 162 14.46 3gw2A 108 14.47 1lj9A 144 14.76 a.4.5.28 78035 1sfuA 75 15.62 a.4.5.19 105503 1qzzA 374 15.84 a.4.5.29,c.66.1.12 96719,96720 2b0lA 102 15.86 a.4.5.66 127641 2pexA 153 16.34 1r1tA 122 17.40 a.4.5.5 104769 3lstA 348 17.79 1bia 321 18.15 1wsuA 124 18.49 a.4.5.35,a.4.5.35 121245,121246 1biaA 321 19.17 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 3i53A 332 19.42 2o0yA 260 19.79 2d1hA 109 19.79 a.4.5.50 131125 3f3xA 144 20.33 3eyyA 145 21.38 2bv6A 142 21.77 a.4.5.28 146218 1u2wA 122 22.59 a.4.5.5 119487 2z99A 219 22.68 2h09A 155 22.78 1bm9A 122 22.86 a.4.5.7 16116 2ev0A 142 23.12 a.4.5.24,a.76.1.1 132413,132414 1jgsA 138 23.96 a.4.5.28 66683 3df8A 111 23.97 2g7uA 257 24.61 3fm5A 150 25.39 2v79A 135 25.41 2yu3A 95 28.71 3b73A 111 29.05 2w25A 150 29.62 3gwzA 369 30.24 2cg4A 152 31.15 a.4.5.32,d.58.4.2 130417,130418 2f2eA 146 31.20 a.4.5.69 132808 2qz8A 149 32.89 2fe3A 145 33.23 2cfxA 144 33.41 a.4.5.32,d.58.4.2 130395,130396 3echA 142 33.54 3mklA 120 34.48 2ia0A 171 37.11 2qwwA 154 37.91 2ia2A 265 38.10 2g9wA 138 38.21 a.4.5.39 147097 1ub9A 100 38.72 a.4.5.28 99159 1x19A 359 38.72 2dbbA 151 39.19 1z1dA 103 40.42 a.4.5.16 124351 2dk5A 91 42.10 a.4.5.85 146534 2fswA 107 43.99 a.4.5.69 134042 1mzbA 136 45.12 a.4.5.42 91497 2hztA 107 48.06 a.4.5.69 147462 1z91A 147 49.25 a.4.5.28 124736 1j5yA 187 49.32 a.4.5.1,d.94.2.1 71592,71593 2jt1A 77 50.86 3htuA 79 52.32 2p8tA 200 54.42 a.4.5.72,d.74.4.2 149315,149316 1tqmA 282 54.76 a.4.5.56,d.144.1.9 107236,107237 2ivmA 150 57.55 1k78A 149 57.60 a.4.1.5,a.4.1.5 68255,68256 1fp2A 352 61.90 a.4.5.29,c.66.1.12 59941,59942 3cuoA 99 62.42 3kfwX 247 62.84 1lvaA 258 63.65 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1r7jA 95 64.11 a.4.5.49 104836 3fyaA 99 64.95 1kyzA 365 67.94 a.4.5.29,c.66.1.12 73312,73313 1z7uA 112 70.69 a.4.5.69 124672 3g5gA 99 71.33 1q1hA 110 71.52 a.4.5.41 95580 2dqlA 115 71.61 1tbxA 99 71.94 a.4.5.48 106748 2e7xA 150 72.49 2b5aA 77 75.04 a.35.1.3 127882 2ijlA 135 75.07 3bp8A 406 77.68 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2fq3A 104 80.51 a.4.1.18 133936 2j5pA 76 80.62 a.4.5.67 138050 2pn6A 150 82.56 3eusA 86 83.26 1y0uA 96 83.50 a.4.5.5 116310 2pjpA 121 83.93 3i4pA 162 87.60 3f8bA 116 87.94