# TARGET T0586 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0586.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1767 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 S 0.002 0.020 0.755 0.005 0.011 0.007 0.001 0.001 0.022 0.109 0.026 0.020 0.022 2 N 0.002 0.015 0.624 0.019 0.031 0.015 0.001 0.002 0.029 0.141 0.074 0.018 0.028 3 A 0.006 0.036 0.414 0.007 0.046 0.027 0.005 0.007 0.110 0.130 0.126 0.047 0.037 4 M 0.011 0.050 0.514 0.006 0.031 0.014 0.008 0.010 0.122 0.083 0.024 0.019 0.108 5 N 0.005 0.040 0.569 0.003 0.005 0.005 0.002 0.003 0.120 0.078 0.008 0.135 0.028 6 P 0.003 0.057 0.609 0.003 0.008 0.005 0.002 0.003 0.045 0.128 0.025 0.013 0.102 7 T 0.002 0.033 0.730 0.006 0.027 0.013 0.001 0.001 0.013 0.107 0.034 0.017 0.016 8 F 0.001 0.014 0.199 0.002 0.131 0.051 0.001 0.001 0.004 0.115 0.462 0.003 0.016 9 H 0.001 0.007 0.233 0.001 0.098 0.027 0.001 0.001 0.001 0.102 0.522 0.004 0.003 10 A 0.001 0.004 0.142 0.001 0.072 0.027 0.001 0.001 0.001 0.246 0.497 0.005 0.004 11 D 0.001 0.008 0.125 0.001 0.006 0.018 0.001 0.001 0.001 0.375 0.461 0.002 0.003 12 K 0.001 0.024 0.459 0.001 0.003 0.116 0.001 0.001 0.001 0.308 0.072 0.011 0.004 13 P 0.001 0.021 0.453 0.001 0.004 0.413 0.001 0.001 0.002 0.038 0.019 0.007 0.041 14 I 0.001 0.003 0.025 0.001 0.006 0.945 0.001 0.001 0.001 0.004 0.003 0.005 0.006 15 Y 0.001 0.001 0.002 0.001 0.004 0.990 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 S 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 Q 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 I 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 S 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 D 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 W 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 M 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 K 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 K 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.003 0.001 0.001 25 Q 0.001 0.001 0.001 0.001 0.001 0.986 0.001 0.001 0.001 0.001 0.014 0.001 0.001 26 M 0.001 0.001 0.001 0.001 0.001 0.986 0.001 0.001 0.001 0.001 0.011 0.001 0.001 27 I 0.001 0.001 0.009 0.001 0.009 0.932 0.001 0.001 0.001 0.006 0.040 0.001 0.001 28 T 0.001 0.001 0.014 0.001 0.009 0.120 0.001 0.001 0.001 0.023 0.831 0.001 0.002 29 G 0.001 0.001 0.082 0.001 0.003 0.005 0.001 0.001 0.002 0.102 0.800 0.004 0.001 30 E 0.004 0.026 0.680 0.001 0.008 0.008 0.001 0.001 0.043 0.115 0.050 0.032 0.032 31 W 0.005 0.212 0.461 0.001 0.004 0.005 0.003 0.003 0.076 0.107 0.016 0.028 0.078 32 K 0.001 0.014 0.885 0.004 0.003 0.002 0.001 0.001 0.014 0.044 0.007 0.011 0.015 33 G 0.001 0.005 0.078 0.010 0.176 0.019 0.001 0.001 0.003 0.059 0.631 0.002 0.016 34 E 0.001 0.001 0.041 0.002 0.046 0.002 0.001 0.001 0.001 0.161 0.740 0.006 0.001 35 D 0.002 0.022 0.374 0.002 0.163 0.012 0.001 0.001 0.004 0.273 0.109 0.020 0.018 36 K 0.002 0.106 0.394 0.001 0.031 0.022 0.001 0.001 0.008 0.264 0.132 0.005 0.033 37 L 0.001 0.052 0.613 0.002 0.008 0.033 0.001 0.001 0.005 0.231 0.029 0.021 0.006 38 P 0.001 0.035 0.598 0.003 0.018 0.125 0.001 0.001 0.005 0.102 0.064 0.005 0.043 39 S 0.001 0.020 0.400 0.004 0.033 0.362 0.001 0.001 0.002 0.088 0.046 0.029 0.014 40 V 0.001 0.001 0.029 0.001 0.020 0.933 0.001 0.001 0.001 0.006 0.005 0.001 0.004 41 R 0.001 0.001 0.003 0.001 0.011 0.979 0.001 0.001 0.001 0.001 0.003 0.001 0.001 42 E 0.001 0.001 0.001 0.001 0.011 0.984 0.001 0.001 0.001 0.001 0.002 0.001 0.001 43 M 0.001 0.001 0.001 0.001 0.003 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 44 G 0.001 0.001 0.001 0.001 0.005 0.989 0.001 0.001 0.001 0.001 0.005 0.001 0.001 45 V 0.001 0.001 0.001 0.001 0.008 0.971 0.001 0.001 0.001 0.001 0.018 0.001 0.001 46 K 0.001 0.001 0.002 0.001 0.024 0.931 0.001 0.001 0.001 0.002 0.039 0.001 0.001 47 L 0.001 0.001 0.021 0.001 0.015 0.659 0.001 0.001 0.001 0.031 0.267 0.002 0.002 48 A 0.002 0.007 0.130 0.001 0.020 0.231 0.001 0.001 0.005 0.045 0.549 0.006 0.005 49 V 0.002 0.076 0.460 0.001 0.004 0.094 0.001 0.001 0.024 0.276 0.031 0.012 0.019 50 N 0.001 0.002 0.914 0.001 0.001 0.009 0.001 0.001 0.003 0.068 0.002 0.001 0.002 51 P 0.001 0.001 0.007 0.001 0.071 0.792 0.001 0.001 0.001 0.007 0.121 0.001 0.001 52 N 0.001 0.001 0.007 0.001 0.070 0.747 0.001 0.001 0.001 0.011 0.162 0.001 0.001 53 T 0.001 0.001 0.018 0.001 0.056 0.910 0.001 0.001 0.001 0.010 0.003 0.001 0.001 54 V 0.001 0.001 0.001 0.001 0.002 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 S 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 R 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.002 0.001 0.001 57 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 Y 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 Q 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 E 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.005 0.001 0.001 61 L 0.001 0.001 0.001 0.001 0.001 0.986 0.001 0.001 0.001 0.001 0.013 0.001 0.001 62 E 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.004 0.001 0.001 63 R 0.001 0.001 0.001 0.001 0.004 0.962 0.001 0.001 0.001 0.005 0.025 0.001 0.001 64 A 0.002 0.001 0.009 0.002 0.009 0.255 0.001 0.001 0.001 0.020 0.691 0.001 0.011 65 G 0.011 0.001 0.079 0.005 0.002 0.019 0.001 0.001 0.003 0.110 0.713 0.047 0.011 66 Y 0.155 0.003 0.360 0.006 0.002 0.014 0.005 0.001 0.020 0.031 0.016 0.175 0.212 67 I 0.374 0.003 0.045 0.005 0.001 0.012 0.020 0.004 0.021 0.005 0.003 0.261 0.247 68 Y 0.497 0.004 0.034 0.031 0.002 0.017 0.036 0.006 0.016 0.005 0.005 0.195 0.154 69 A 0.384 0.004 0.037 0.012 0.003 0.007 0.020 0.003 0.010 0.006 0.009 0.162 0.343 70 K 0.210 0.002 0.062 0.027 0.003 0.002 0.008 0.001 0.007 0.019 0.017 0.313 0.328 71 R 0.108 0.003 0.080 0.031 0.011 0.003 0.004 0.001 0.003 0.093 0.228 0.124 0.311 72 G 0.057 0.006 0.097 0.029 0.009 0.002 0.003 0.001 0.003 0.199 0.268 0.207 0.121 73 M 0.098 0.013 0.203 0.013 0.007 0.004 0.005 0.001 0.004 0.129 0.111 0.080 0.332 74 G 0.179 0.013 0.187 0.013 0.005 0.006 0.008 0.002 0.008 0.055 0.021 0.360 0.144 75 S 0.333 0.008 0.072 0.022 0.006 0.010 0.023 0.003 0.007 0.015 0.009 0.121 0.370 76 F 0.428 0.006 0.026 0.010 0.005 0.007 0.040 0.004 0.012 0.005 0.005 0.315 0.137 77 V 0.446 0.012 0.050 0.018 0.009 0.010 0.044 0.003 0.009 0.009 0.010 0.061 0.317 78 T 0.108 0.008 0.209 0.011 0.009 0.010 0.007 0.001 0.011 0.040 0.023 0.431 0.132 79 S 0.022 0.009 0.231 0.014 0.021 0.022 0.003 0.001 0.004 0.170 0.281 0.038 0.184 80 D 0.005 0.012 0.410 0.006 0.039 0.037 0.001 0.001 0.002 0.214 0.222 0.029 0.025 81 K 0.004 0.011 0.275 0.004 0.127 0.271 0.001 0.001 0.002 0.132 0.133 0.015 0.025 82 A 0.004 0.015 0.180 0.002 0.137 0.465 0.001 0.001 0.002 0.050 0.112 0.012 0.020 83 L 0.003 0.012 0.128 0.003 0.100 0.652 0.001 0.001 0.002 0.028 0.049 0.007 0.015 84 F 0.002 0.007 0.083 0.003 0.071 0.755 0.001 0.001 0.002 0.019 0.038 0.006 0.012 85 D 0.001 0.004 0.057 0.002 0.060 0.790 0.001 0.001 0.001 0.015 0.059 0.005 0.005 86 Q 0.001 0.002 0.028 0.001 0.035 0.867 0.001 0.001 0.001 0.009 0.051 0.002 0.005 87 L 0.001 0.002 0.059 0.001 0.022 0.843 0.001 0.001 0.001 0.017 0.047 0.003 0.004 88 K 0.001 0.003 0.105 0.001 0.024 0.801 0.001 0.001 0.001 0.017 0.041 0.003 0.004 89 K 0.001 0.002 0.041 0.001 0.020 0.897 0.001 0.001 0.001 0.011 0.025 0.001 0.002 90 E 0.001 0.001 0.026 0.001 0.012 0.909 0.001 0.001 0.001 0.011 0.038 0.001 0.001 91 L 0.001 0.001 0.035 0.001 0.017 0.904 0.001 0.001 0.001 0.009 0.030 0.001 0.002 92 A 0.001 0.001 0.013 0.001 0.013 0.961 0.001 0.001 0.001 0.004 0.007 0.001 0.001 93 D 0.001 0.001 0.004 0.001 0.011 0.972 0.001 0.001 0.001 0.002 0.010 0.001 0.001 94 A 0.001 0.001 0.002 0.001 0.007 0.976 0.001 0.001 0.001 0.001 0.013 0.001 0.001 95 I 0.001 0.001 0.004 0.001 0.005 0.979 0.001 0.001 0.001 0.002 0.009 0.001 0.001 96 T 0.001 0.001 0.004 0.001 0.006 0.985 0.001 0.001 0.001 0.001 0.004 0.001 0.001 97 E 0.001 0.001 0.001 0.001 0.005 0.989 0.001 0.001 0.001 0.001 0.004 0.001 0.001 98 R 0.001 0.001 0.001 0.001 0.003 0.987 0.001 0.001 0.001 0.001 0.008 0.001 0.001 99 F 0.001 0.001 0.002 0.001 0.002 0.992 0.001 0.001 0.001 0.001 0.004 0.001 0.001 100 L 0.001 0.001 0.001 0.001 0.003 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 101 E 0.001 0.001 0.001 0.001 0.002 0.992 0.001 0.001 0.001 0.001 0.004 0.001 0.001 102 E 0.001 0.001 0.001 0.001 0.002 0.985 0.001 0.001 0.001 0.001 0.012 0.001 0.001 103 A 0.001 0.001 0.003 0.001 0.005 0.970 0.001 0.001 0.001 0.001 0.021 0.001 0.001 104 K 0.001 0.001 0.013 0.001 0.019 0.920 0.001 0.001 0.001 0.004 0.043 0.001 0.001 105 S 0.001 0.001 0.025 0.001 0.076 0.734 0.001 0.001 0.001 0.019 0.139 0.001 0.003 106 I 0.001 0.001 0.037 0.001 0.052 0.246 0.001 0.001 0.001 0.052 0.607 0.001 0.001 107 G 0.001 0.009 0.165 0.001 0.028 0.066 0.001 0.001 0.005 0.077 0.644 0.001 0.004 108 L 0.001 0.025 0.819 0.001 0.003 0.012 0.001 0.001 0.011 0.112 0.006 0.008 0.004 109 D 0.001 0.007 0.902 0.001 0.001 0.008 0.001 0.001 0.004 0.067 0.006 0.001 0.005 110 D 0.001 0.002 0.050 0.001 0.081 0.810 0.001 0.001 0.001 0.024 0.031 0.001 0.001 111 Q 0.001 0.001 0.003 0.001 0.103 0.867 0.001 0.001 0.001 0.002 0.024 0.001 0.001 112 T 0.001 0.001 0.006 0.001 0.082 0.898 0.001 0.001 0.001 0.002 0.010 0.001 0.001 113 A 0.001 0.001 0.006 0.001 0.015 0.975 0.001 0.001 0.001 0.001 0.002 0.001 0.001 114 I 0.001 0.001 0.001 0.001 0.016 0.976 0.001 0.001 0.001 0.001 0.004 0.001 0.001 115 E 0.001 0.001 0.002 0.001 0.032 0.945 0.001 0.001 0.001 0.001 0.018 0.001 0.001 116 L 0.001 0.001 0.003 0.001 0.013 0.947 0.001 0.001 0.001 0.002 0.031 0.001 0.001 117 L 0.001 0.001 0.019 0.001 0.010 0.901 0.001 0.001 0.001 0.004 0.061 0.001 0.001 118 I 0.001 0.001 0.045 0.001 0.017 0.829 0.001 0.001 0.001 0.011 0.087 0.004 0.002 119 K 0.001 0.004 0.087 0.001 0.018 0.668 0.001 0.001 0.002 0.056 0.152 0.003 0.008 120 R 0.001 0.008 0.451 0.001 0.015 0.223 0.001 0.001 0.006 0.162 0.117 0.007 0.009 121 S 0.001 0.006 0.714 0.001 0.019 0.046 0.001 0.001 0.008 0.091 0.099 0.005 0.010 122 R 0.001 0.010 0.464 0.002 0.059 0.056 0.001 0.001 0.009 0.130 0.254 0.006 0.007 123 N 0.001 0.014 0.446 0.002 0.051 0.050 0.001 0.001 0.011 0.180 0.230 0.006 0.008 124 H 0.001 0.022 0.602 0.002 0.028 0.029 0.001 0.001 0.014 0.195 0.083 0.009 0.013 125 E 0.001 0.023 0.750 0.002 0.015 0.018 0.001 0.001 0.016 0.114 0.031 0.011 0.018