# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 1.51e-15 2ek5A 129 3.82e-14 3ic7A 126 1.00e-13 2wv0A 243 1.50e-13 3edpA 236 3.22e-12 1hw1A 239 5.97e-12 a.4.5.6,a.78.1.1 16111,18441 3eetA 274 7.32e-12 3bwgA 239 2.36e-11 a.4.5.6,d.190.1.2 155693,155694 2hs5A 239 1.49e-09 a.4.5.6,a.78.1.1 147379,147380 3f8mA 248 6.09e-09 2di3A 239 9.71e-09 3c7jA 237 2.60e-08 3ihuA 222 3.53e-08 3fmsA 209 4.71e-08 1fx7A 230 1.31e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 1.81e-05 2dtrA 226 3.13e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.000122 1on2A 142 0.000787 a.4.5.24,a.76.1.1 87103,87104 2hr3A 147 0.02057 a.4.5.28 136678 2ev0A 142 0.02787 a.4.5.24,a.76.1.1 132413,132414 2h09A 155 0.03119 1bia 321 0.04801 3ctaA 230 0.05797 a.4.5.28,b.43.5.2 156979,156980 2cohA 202 0.06743 a.4.5.4,b.82.3.2 130677,130678 1lj9A 144 0.07499 a.4.5.28 78035 2oqgA 114 0.08358 1sfxA 109 0.08944 a.4.5.50 105505 1lnwA 147 0.08964 a.4.5.28 78104 2ethA 154 0.1209 a.4.5.28 132358 2h6cA 232 0.1284 a.4.5.4,b.82.3.2 147232,147233 2a61A 145 0.1347 a.4.5.28 126187 1r1tA 122 0.1531 a.4.5.5 104769 1smtA 122 0.1551 a.4.5.5 16109 3e97A 231 0.1591 2fbhA 146 0.1592 a.4.5.28 133245 1r1uA 106 0.1616 a.4.5.5 104771 2fbkA 181 0.1637 a.4.5.28 133247 2pjpA 121 0.1659 1s3jA 155 0.1668 a.4.5.28 98437 3d0sA 227 0.1740 1z91A 147 0.1743 a.4.5.28 124736 2fmyA 220 0.1777 2fbiA 142 0.1811 a.4.5.28 133246 3e6cC 250 0.1849 a.4.5.4,b.82.3.2 158038,158039 2nnnA 140 0.2056 3e5xA 250 0.2058 2pexA 153 0.2070 3f6oA 118 0.2219 3dv8A 220 0.2320 3gw2A 108 0.2954 1jgsA 138 0.3082 a.4.5.28 66683 3deuA 166 0.3118 a.4.5.28 157600 2zdbA 195 0.3331 3broA 141 0.3887 a.4.5.28 155517 3fm5A 150 0.4260 2f2eA 146 0.4468 a.4.5.69 132808 3f6vA 151 0.4623 3hsrA 140 0.4846 2gxgA 146 0.4931 1xd7A 145 0.4945 a.4.5.55 109566 2bv6A 142 0.5186 a.4.5.28 146218 3cuoA 99 0.5576 3l09A 266 0.5656 3bp8A 406 0.5658 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2zcwA 202 0.5671 3cdhA 155 0.5793 2o0yA 260 0.6022 3bpvA 138 0.6149 3kfwX 247 0.6202 1i6xA 209 0.6204 a.4.5.4,b.82.3.2 83673,83674 1u2wA 122 0.6254 a.4.5.5 119487 2rdpA 150 0.6300 3ecoA 139 0.6397 1mkmA 249 0.7004 a.4.5.33,d.110.2.2 79242,79243 2zkzA 99 0.8063 1wsuA 124 0.8425 a.4.5.35,a.4.5.35 121245,121246 2b0lA 102 0.8511 a.4.5.66 127641 3bj6A 152 0.8912 1ulyA 192 0.9041 a.4.5.58 113297 1yg2A 179 0.9047 a.4.5.61 116681 2fa5A 162 0.9686 2nyxA 168 1.036 3jthA 98 1.036 1zybA 232 1.099 a.4.5.4,b.82.3.2 125815,125816 1biaA 321 1.116 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 3g3zA 145 1.129 2g7uA 257 1.145 2v79A 135 1.189 3k69A 162 1.359 3e6mA 161 1.416 3cjnA 162 1.476 3bddA 142 1.480 2cfxA 144 1.515 a.4.5.32,d.58.4.2 130395,130396 1hkqA 132 1.538 a.4.5.10 83555 2ia0A 171 1.566 2gauA 232 1.573 a.4.5.4,b.82.3.2 134894,134895 2ia2A 265 1.593 2qz8A 149 1.835 2cg4A 152 1.879 a.4.5.32,d.58.4.2 130417,130418 3eqxA 373 1.917 3bjaA 139 1.954 3boqA 160 1.964 1ub9A 100 2.033 a.4.5.28 99159 2rn7A 108 2.203 3jw4A 148 2.223 2ivmA 150 2.226 3lwfA 159 2.391 1ylfA 149 2.687 a.4.5.55 123648 1z6rA 406 2.785 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2h6bA 250 2.849 a.4.5.4,b.82.3.2 147228,147229 1hw5A 210 2.969 a.4.5.4,b.82.3.2 16098,28137 1sd4A 126 3.122 a.4.5.39 105428 2qwwA 154 3.443 2cyyA 151 3.994 a.4.5.32,d.58.4.2 131028,131029 2bgcA 238 4.032 a.4.5.4,b.82.3.3 128458,128459 1ri7A 171 4.124 a.4.5.32,d.58.4.2 97504,97505 2frhA 127 4.637 a.4.5.28 133988 1p4xA 250 4.906 a.4.5.28,a.4.5.28 87784,87785 3gfjA 146 5.065 3fx3A 237 5.127 2p5vA 162 5.142 3echA 142 5.174 3k0lA 162 5.232 3gflA 146 5.232 3ez2A 398 5.533 1q1hA 110 5.726 a.4.5.41 95580 3gfmA 146 5.739 1okrA 123 6.547 a.4.5.39 93269 2hoeA 380 6.822 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1lvaA 258 6.872 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2fu4A 83 8.126 3b73A 111 8.322 2d1hA 109 8.441 a.4.5.50 131125 2pn6A 150 8.888 1jhgA 101 9.534 a.4.12.1 19009 1tbxA 99 9.718 a.4.5.48 106748 3h3zA 235 9.98 2fe3A 145 10.47 2qlzA 232 11.79 1xmaA 145 11.86 a.4.5.61 115477 3f3xA 144 12.42 2p8tA 200 12.63 a.4.5.72,d.74.4.2 149315,149316 3i71A 68 13.25 1rztA 331 13.68 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 3go5A 285 13.87 2eq8C 40 14.47 2qenA 350 15.52 1mzbA 136 17.90 a.4.5.42 91497 1g2hA 61 18.34 a.4.1.12 60224 1vin 268 19.54 3majA 382 20.10 1utxA 66 21.10 a.35.1.3 108034 2dbbA 151 22.00 1j5yA 187 22.08 a.4.5.1,d.94.2.1 71592,71593 3cuqB 218 22.22 3irrA 67 22.84 3i4pA 162 23.14 2b5aA 77 23.35 a.35.1.3 127882 3eyyA 145 23.46 2w57A 150 23.83 3bz6A 183 24.50 a.4.5.75,a.4.5.75 155739,155740 3f8bA 116 24.93 3ezfA 403 24.96 1resA 43 24.97 a.4.1.2 16023 3h7rA 331 25.31 1y7yA 74 28.46 a.35.1.3 122729 2bnmA 198 29.20 a.35.1.3,b.82.1.10 128835,128836 2eljA 88 29.52 1adrA 76 29.87 a.35.1.2 17042 2cro 71 30.07 3gwzA 369 31.47 2jn6A 97 32.04 a.4.1.19 148144 2obpA 96 32.62 a.4.5.71 148718 2croA 71 34.31 a.35.1.2 17038 3hhhA 116 34.75 1dpuA 99 35.92 a.4.5.16 16150 2dt5A 211 36.47 a.4.5.38,c.2.1.12 131708,131709 2gqqA 163 37.40 2fjrA 189 37.70 3edyA 544 38.14 1b0nA 111 38.55 a.34.1.1,a.35.1.3 17001,17064 3ez7A 398 39.00 3h7uA 335 39.00 2eq9C 41 39.33 1r69A 69 39.40 a.35.1.2 17028 2hiyA 183 39.49 d.356.1.1 147288 2f2cA 254 39.91 a.74.1.1,a.74.1.1 132805,132806 1r7jA 95 40.83 a.4.5.49 104836 2pijA 67 44.12 2hm7A 310 45.55 3ln3A 324 46.41 1y9qA 192 46.64 a.35.1.8,b.82.1.15 116592,116593 2v7fA 150 47.25 a.4.5.84 152721 2epiA 100 48.01 1pp7U 131 49.61 a.4.5.44 94973 1lxjA 104 51.94 d.58.48.1 84736 3dp7A 363 53.86 2zhgA 154 54.09 1f5qB 252 58.78 a.74.1.1,a.74.1.1 18362,18363 3kkzA 267 59.45 3ivpA 126 59.90 3iwfA 107 60.16 1rzsA 61 60.36 a.35.1.2 105139 2zmeA 258 60.76 2cchB 260 61.13 a.74.1.1,a.74.1.1 130237,130238 1wi9A 72 62.13 a.4.5.47 114663 3i53A 332 62.82 2eshA 118 63.82 a.4.5.61 132325 1g2rA 100 63.91 d.192.1.1 60231 1j96A 323 64.52 c.1.7.1 71616 2bpsA 81 64.80 3h4gA 325 65.69 2jmlA 81 65.73 2g9wA 138 66.70 a.4.5.39 147097 1w85I 49 67.21 a.9.1.1 114347 1u3eM 174 67.61 d.4.1.3,d.285.1.1 107640,107641 2o3fA 111 68.83 a.4.1.20 148573 3cuqA 234 69.33 2r3sA 335 71.24 2cujA 108 72.09 a.4.1.18 130812 2f5yA 91 72.38 b.36.1.1 133015 2ztgA 739 73.94 3elkA 117 76.98 1hstA 90 79.62 a.4.5.13 16140 2e7xA 150 80.82 1tw3A 360 83.43 a.4.5.29,c.66.1.12 107373,107374 2jt1A 77 84.93 2k02A 87 85.16 3if0X 153 86.76 1lzlA 323 88.11 c.69.1.2 78306 2w25A 150 88.25 3hihA 223 88.86