# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 2.15e-17 3ic7A 126 4.83e-16 2ek5A 129 6.20e-16 2wv0A 243 4.99e-15 3edpA 236 1.57e-13 1hw1A 239 2.75e-13 a.4.5.6,a.78.1.1 16111,18441 3eetA 274 3.89e-13 3bwgA 239 1.79e-12 a.4.5.6,d.190.1.2 155693,155694 2hs5A 239 3.30e-10 a.4.5.6,a.78.1.1 147379,147380 3f8mA 248 5.18e-10 2di3A 239 1.99e-09 3ihuA 222 3.27e-09 3c7jA 237 4.32e-09 3fmsA 209 5.22e-09 1fx7A 230 1.76e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 6.37e-06 2dtrA 226 8.79e-06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 2.11e-05 1on2A 142 0.000135 a.4.5.24,a.76.1.1 87103,87104 2ev0A 142 0.002854 a.4.5.24,a.76.1.1 132413,132414 2h09A 155 0.004559 2hr3A 147 0.006363 a.4.5.28 136678 2cohA 202 0.01071 a.4.5.4,b.82.3.2 130677,130678 2pexA 153 0.01442 1bia 321 0.01854 1z91A 147 0.01940 a.4.5.28 124736 1lj9A 144 0.02033 a.4.5.28 78035 2zdbA 195 0.02332 3ctaA 230 0.02497 a.4.5.28,b.43.5.2 156979,156980 2fbhA 146 0.03060 a.4.5.28 133245 3d0sA 227 0.03442 3e5xA 250 0.03469 1lnwA 147 0.03775 a.4.5.28 78104 2ethA 154 0.04088 a.4.5.28 132358 1r1tA 122 0.04167 a.4.5.5 104769 1sfxA 109 0.04187 a.4.5.50 105505 2h6cA 232 0.04571 a.4.5.4,b.82.3.2 147232,147233 3deuA 166 0.04652 a.4.5.28 157600 1smtA 122 0.04873 a.4.5.5 16109 1s3jA 155 0.04925 a.4.5.28 98437 3e6cC 250 0.05065 a.4.5.4,b.82.3.2 158038,158039 3e97A 231 0.05318 2zcwA 202 0.05465 2fmyA 220 0.05543 1r1uA 106 0.05835 a.4.5.5 104771 3dv8A 220 0.05880 3fm5A 150 0.05930 2a61A 145 0.07008 a.4.5.28 126187 3hsrA 140 0.07456 2f2eA 146 0.07572 a.4.5.69 132808 2nnnA 140 0.08319 2fbiA 142 0.09243 a.4.5.28 133246 2pjpA 121 0.09635 3bp8A 406 0.1061 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3f6oA 118 0.1119 1xd7A 145 0.1151 a.4.5.55 109566 2rdpA 150 0.1212 2fbkA 181 0.1275 a.4.5.28 133247 1wsuA 124 0.1336 a.4.5.35,a.4.5.35 121245,121246 3gw2A 108 0.1394 3broA 141 0.1424 a.4.5.28 155517 2gxgA 146 0.1547 2oqgA 114 0.1619 1i6xA 209 0.1642 a.4.5.4,b.82.3.2 83673,83674 3cdhA 155 0.1705 3lwfA 159 0.1713 1jgsA 138 0.1976 a.4.5.28 66683 3k69A 162 0.1985 3ecoA 139 0.2111 1u2wA 122 0.2127 a.4.5.5 119487 2nyxA 168 0.2172 2b0lA 102 0.2358 a.4.5.66 127641 3bpvA 138 0.2412 1zybA 232 0.2444 a.4.5.4,b.82.3.2 125815,125816 2o0yA 260 0.2462 3bj6A 152 0.2465 2g7uA 257 0.2580 1ulyA 192 0.2635 a.4.5.58 113297 3e6mA 161 0.2669 3kfwX 247 0.2745 3cuoA 99 0.2783 2fa5A 162 0.2806 3cjnA 162 0.3089 3f6vA 151 0.3146 1mkmA 249 0.3241 a.4.5.33,d.110.2.2 79242,79243 2bv6A 142 0.3544 a.4.5.28 146218 3bddA 142 0.4126 1biaA 321 0.4151 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 3g3zA 145 0.4210 3l09A 266 0.4382 3jthA 98 0.4452 2ia2A 265 0.4606 3eqxA 373 0.4658 1ylfA 149 0.5357 a.4.5.55 123648 2gauA 232 0.5556 a.4.5.4,b.82.3.2 134894,134895 2zkzA 99 0.5579 1ub9A 100 0.5997 a.4.5.28 99159 2qwwA 154 0.6116 2d1hA 109 0.6211 a.4.5.50 131125 2cfxA 144 0.6286 a.4.5.32,d.58.4.2 130395,130396 2h6bA 250 0.6305 a.4.5.4,b.82.3.2 147228,147229 2cg4A 152 0.6310 a.4.5.32,d.58.4.2 130417,130418 3ez2A 398 0.6649 2ia0A 171 0.7062 2cyyA 151 0.7073 a.4.5.32,d.58.4.2 131028,131029 2qz8A 149 0.7488 1z6rA 406 0.8313 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3fx3A 237 0.8528 1yg2A 179 0.9256 a.4.5.61 116681 2v79A 135 0.9866 3k0lA 162 1.092 3h3zA 235 1.200 1lvaA 258 1.264 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1hw5A 210 1.339 a.4.5.4,b.82.3.2 16098,28137 1q1hA 110 1.442 a.4.5.41 95580 3boqA 160 1.492 3gflA 146 1.611 2ivmA 150 1.665 3gfjA 146 1.703 3gfmA 146 1.804 2p5vA 162 1.890 1jhgA 101 2.038 a.4.12.1 19009 2frhA 127 2.109 a.4.5.28 133988 2hoeA 380 2.183 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2rn7A 108 2.257 3jw4A 148 2.426 3echA 142 2.780 2pn6A 150 2.865 2j5pA 76 2.898 a.4.5.67 138050 3bjaA 139 2.901 3irrA 67 2.994 1p4xA 250 3.170 a.4.5.28,a.4.5.28 87784,87785 1sd4A 126 3.314 a.4.5.39 105428 1j5yA 187 3.331 a.4.5.1,d.94.2.1 71592,71593 3b73A 111 3.390 2gqqA 163 3.556 3go5A 285 3.718 3majA 382 3.918 2bgcA 238 4.238 a.4.5.4,b.82.3.3 128458,128459 3f3xA 144 4.248 1hkqA 132 4.300 a.4.5.10 83555 1vin 268 4.373 1okrA 123 5.005 a.4.5.39 93269 3i71A 68 5.032 2b5aA 77 5.097 a.35.1.3 127882 2zhgA 154 5.122 2fe3A 145 5.131 2p8tA 200 5.193 a.4.5.72,d.74.4.2 149315,149316 1utxA 66 5.489 a.35.1.3 108034 3cuqB 218 5.876 2fu4A 83 6.121 1tbxA 99 6.500 a.4.5.48 106748 3gwzA 369 6.536 1pdnC 128 6.585 a.4.1.5 16047 2eq8C 40 6.832 1b0nA 111 6.926 a.34.1.1,a.35.1.3 17001,17064 1qbjA 81 7.343 a.4.5.19 16155 2obpA 96 7.405 a.4.5.71 148718 1adrA 76 7.439 a.35.1.2 17042 2dbbA 151 7.446 2cujA 108 7.466 a.4.1.18 130812 3cuqA 234 7.779 1ri7A 171 7.988 a.4.5.32,d.58.4.2 97504,97505 1y7yA 74 8.375 a.35.1.3 122729 2bnmA 198 8.735 a.35.1.3,b.82.1.10 128835,128836 1mzbA 136 8.956 a.4.5.42 91497 1j9iA 68 9.852 a.6.1.5 71619 2fjrA 189 10.14 2cro 71 10.23 1wi9A 72 10.39 a.4.5.47 114663 2jn6A 97 10.82 a.4.1.19 148144 2croA 71 10.98 a.35.1.2 17038 2v9vA 135 11.90 a.4.5.35,a.4.5.35 152809,152810 3i53A 332 12.18 2r1jL 68 12.45 a.35.1.2 151525 1r7jA 95 12.57 a.4.5.49 104836 1r69A 69 13.21 a.35.1.2 17028 1xmaA 145 13.38 a.4.5.61 115477 1y9qA 192 13.78 a.35.1.8,b.82.1.15 116592,116593 3eyyA 145 14.30 3i4pA 162 14.33 2ve8A 73 15.52 a.4.5.67 153008 3ivpA 126 16.16 2qlzA 232 16.63 1us0A 316 16.99 c.1.7.1 99850 2hm7A 310 17.42 2qenA 350 17.46 2dt5A 211 18.14 a.4.5.38,c.2.1.12 131708,131709 1rztA 331 18.92 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1r8eA 278 19.14 a.6.1.3,d.60.1.1 104843,104844 2zmeA 258 19.24 3iwfA 107 19.47 2f2cA 254 19.91 a.74.1.1,a.74.1.1 132805,132806 2eq9C 41 20.01 1tw3A 360 20.71 a.4.5.29,c.66.1.12 107373,107374 3hh0A 146 21.92 2k02A 87 22.13 1x19A 359 22.51 2ztgA 739 23.16 3h4gA 325 23.26 2w57A 150 23.48 2e7xA 150 24.22 1g2hA 61 24.37 a.4.1.12 60224 3bz6A 183 24.60 a.4.5.75,a.4.5.75 155739,155740 1ufmA 84 24.62 a.4.5.47 107816 3ke2A 117 24.69 2o3fA 111 25.16 a.4.1.20 148573 3ezfA 403 25.38 2pijA 67 25.70 1f5qB 252 25.89 a.74.1.1,a.74.1.1 18362,18363 2e1nA 138 26.17 1u3eM 174 26.25 d.4.1.3,d.285.1.1 107640,107641 1rzsA 61 26.32 a.35.1.2 105139 3dp7A 363 26.57 1fseA 74 26.79 a.4.6.2 60000 1p4wA 99 27.53 a.4.6.2 87783 2bjcA 62 28.64 a.35.1.5 128620 1zljA 78 29.36 1yfsA 465 29.86 a.203.1.1,d.104.1.1 123088,123089 2cchB 260 29.91 a.74.1.1,a.74.1.1 130237,130238 1pp7U 131 30.14 a.4.5.44 94973 2ictA 94 30.36 a.35.1.3 147605 2g9wA 138 31.04 a.4.5.39 147097 1aisB 200 31.40 a.74.1.2,a.74.1.2 18384,18385 3f8bA 116 31.45 3h7rA 331 32.30 2r3sA 335 32.36 3h7uA 335 32.49 3ieyB 153 33.06 1r69 69 33.50 1j96A 323 33.52 c.1.7.1 71616 1w85I 49 33.75 a.9.1.1 114347 3f6wA 83 36.22 1resA 43 37.74 a.4.1.2 16023 2ebyA 113 38.00 3h5tA 366 38.34 1vk8A 106 39.28 d.58.48.1 108636 1s1pA 331 39.53 c.1.7.1 98350 1je8A 82 40.54 a.4.6.2 77108 2dqlA 115 41.37 2jt1A 77 41.91 3ez7A 398 42.06 1cjgA 62 42.22 a.35.1.5 17112 3kkzA 267 42.27 1qzzA 374 44.20 a.4.5.29,c.66.1.12 96719,96720 1hstA 90 44.45 a.4.5.13 16140 1vz0A 230 44.69 a.4.14.1,d.268.1.1 108929,108930 1fh9A 312 44.83 c.1.8.3 28913 3ln3A 324 45.03 1yqhA 109 45.13 d.58.48.1 123886 3b7hA 78 45.81 3if0X 153 46.61 2v7fA 150 48.87 a.4.5.84 152721 1vbuA 328 49.67 c.1.8.3 119963 1sfuA 75 50.76 a.4.5.19 105503 2bduA 297 51.47 c.108.1.21 146135 2eljA 88 51.59 3gp4A 142 51.81 1s6lA 212 52.84 a.4.5.79,d.357.1.2 145773,145774 2hiyA 183 52.91 d.356.1.1 147288 3gpvA 148 53.20 2htjA 81 53.93 a.4.5.73 147397 3edyA 544 56.47 2o8xA 70 56.49 2jmlA 81 56.89 1zuaX 317 58.82 3m66A 270 59.00 3c8fA 245 59.36 3hhhA 116 59.72 2cobA 70 59.92 a.4.1.15 130673 2iwbA 246 61.50 3ea9A 306 62.99 3e91A 306 63.62 2hgcA 102 63.77 a.4.5.77 147283 2pg4A 95 64.47 a.4.5.48 149455 2z99A 219 65.03 3ea8A 306 65.34 1u5tB 169 66.71 a.4.5.54,a.4.5.54 107686,107687 1atzA 189 66.97 c.62.1.1 34132 2agtA 319 67.08 3cecA 104 67.17 3hi2B 101 68.42 3fzdA 301 68.45 1q2wA 308 71.47 b.47.1.4 88355 1jftA 340 72.24 a.35.1.5,c.93.1.1 66652,66653 3hihA 223 76.36 1g2rA 100 76.44 d.192.1.1 60231 1gsa 316 76.93 2nwhA 317 77.08 1y0uA 96 77.59 a.4.5.5 116310 2epiA 100 78.61 2hztA 107 79.38 a.4.5.69 147462 2q0oA 236 79.84 1aoyA 78 81.41 a.4.5.3 16087 1zgdA 312 81.55 2amdA 311 82.50 3df8A 111 86.30 1mi3A 322 87.45 c.1.7.1 91274 1xn7A 78 88.18 a.4.5.62 115576 3hy0A 441 88.49