# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 4.46e-14 2ek5A 129 1.12e-12 2wv0A 243 3.70e-12 3ic7A 126 7.60e-12 3edpA 236 4.95e-11 1hw1A 239 9.40e-11 a.4.5.6,a.78.1.1 16111,18441 3eetA 274 1.10e-10 3bwgA 239 2.18e-10 a.4.5.6,d.190.1.2 155693,155694 2hs5A 239 9.51e-09 a.4.5.6,a.78.1.1 147379,147380 3f8mA 248 2.78e-08 2di3A 239 5.47e-08 3c7jA 237 1.90e-07 3ihuA 222 2.04e-07 3fmsA 209 2.58e-07 1fx7A 230 5.13e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 0.000115 2dtrA 226 0.000166 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.000360 1on2A 142 0.001653 a.4.5.24,a.76.1.1 87103,87104 2h09A 155 0.03169 2hr3A 147 0.03595 a.4.5.28 136678 2ev0A 142 0.05545 a.4.5.24,a.76.1.1 132413,132414 2cohA 202 0.06409 a.4.5.4,b.82.3.2 130677,130678 3ctaA 230 0.07344 a.4.5.28,b.43.5.2 156979,156980 3d0sA 227 0.08612 2fmyA 220 0.09326 1lj9A 144 0.1192 a.4.5.28 78035 1lnwA 147 0.1264 a.4.5.28 78104 3e97A 231 0.1265 1bia 321 0.1365 3e6cC 250 0.1391 a.4.5.4,b.82.3.2 158038,158039 2zdbA 195 0.1409 1s3jA 155 0.1422 a.4.5.28 98437 2h6cA 232 0.1538 a.4.5.4,b.82.3.2 147232,147233 2ethA 154 0.1664 a.4.5.28 132358 2fbhA 146 0.1792 a.4.5.28 133245 2a61A 145 0.1904 a.4.5.28 126187 3e5xA 250 0.2048 2oqgA 114 0.2062 2zcwA 202 0.2291 1r1uA 106 0.2301 a.4.5.5 104771 1sfxA 109 0.2582 a.4.5.50 105505 3dv8A 220 0.2688 2fbiA 142 0.2692 a.4.5.28 133246 1z91A 147 0.2697 a.4.5.28 124736 1r1tA 122 0.2707 a.4.5.5 104769 2pexA 153 0.2762 1smtA 122 0.2847 a.4.5.5 16109 2pjpA 121 0.2927 3cdhA 155 0.3285 1xd7A 145 0.3439 a.4.5.55 109566 1i6xA 209 0.3503 a.4.5.4,b.82.3.2 83673,83674 2nnnA 140 0.3664 2gxgA 146 0.3919 1jgsA 138 0.4213 a.4.5.28 66683 3deuA 166 0.4300 a.4.5.28 157600 3broA 141 0.4360 a.4.5.28 155517 2fbkA 181 0.4741 a.4.5.28 133247 1yg2A 179 0.5363 a.4.5.61 116681 3f6oA 118 0.5427 3fm5A 150 0.5475 3gw2A 108 0.5511 1wsuA 124 0.5600 a.4.5.35,a.4.5.35 121245,121246 3ecoA 139 0.5884 3bp8A 406 0.6011 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2f2eA 146 0.6127 a.4.5.69 132808 3f6vA 151 0.6262 1mkmA 249 0.6455 a.4.5.33,d.110.2.2 79242,79243 3eqxA 373 0.6565 3kfwX 247 0.6586 3bj6A 152 0.6812 2h6bA 250 0.6813 a.4.5.4,b.82.3.2 147228,147229 2o0yA 260 0.7088 3hsrA 140 0.7413 1zybA 232 0.8214 a.4.5.4,b.82.3.2 125815,125816 2gauA 232 0.8225 a.4.5.4,b.82.3.2 134894,134895 1u2wA 122 0.8585 a.4.5.5 119487 2rdpA 150 0.9003 3cuoA 99 0.9366 3bpvA 138 0.9421 2ia0A 171 1.029 2b0lA 102 1.055 a.4.5.66 127641 3l09A 266 1.142 3k69A 162 1.217 2g7uA 257 1.262 2ia2A 265 1.267 2zkzA 99 1.285 2bv6A 142 1.294 a.4.5.28 146218 3jthA 98 1.304 3g3zA 145 1.349 2ivmA 150 1.398 2fa5A 162 1.445 3cjnA 162 1.484 1ulyA 192 1.492 a.4.5.58 113297 3jw4A 148 1.515 2v79A 135 1.537 2nyxA 168 1.601 2rn7A 108 1.602 2cg4A 152 1.610 a.4.5.32,d.58.4.2 130417,130418 3fx3A 237 1.621 2cfxA 144 1.729 a.4.5.32,d.58.4.2 130395,130396 3bddA 142 1.754 1hkqA 132 1.827 a.4.5.10 83555 3e6mA 161 1.828 2frhA 127 1.853 a.4.5.28 133988 3bjaA 139 1.879 1hw5A 210 1.914 a.4.5.4,b.82.3.2 16098,28137 1ub9A 100 1.920 a.4.5.28 99159 3boqA 160 1.927 1ylfA 149 1.955 a.4.5.55 123648 2cyyA 151 2.042 a.4.5.32,d.58.4.2 131028,131029 1biaA 321 2.313 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 3lwfA 159 2.675 2qwwA 154 2.712 2qz8A 149 2.812 3echA 142 3.417 3gflA 146 3.651 2p5vA 162 3.694 2d1hA 109 3.740 a.4.5.50 131125 3ez2A 398 3.827 3gfmA 146 4.102 3gfjA 146 4.146 2pn6A 150 4.220 2bgcA 238 4.465 a.4.5.4,b.82.3.3 128458,128459 3h3zA 235 4.761 1p4xA 250 5.094 a.4.5.28,a.4.5.28 87784,87785 2hoeA 380 5.627 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3k0lA 162 5.773 2fu4A 83 5.891 1sd4A 126 6.203 a.4.5.39 105428 1rztA 331 6.535 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1lvaA 258 6.916 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1ri7A 171 7.669 a.4.5.32,d.58.4.2 97504,97505 1xmaA 145 7.731 a.4.5.61 115477 3i4pA 162 7.855 1q1hA 110 7.958 a.4.5.41 95580 1tbxA 99 8.351 a.4.5.48 106748 2fe3A 145 8.354 1jhgA 101 8.602 a.4.12.1 19009 2b5aA 77 8.679 a.35.1.3 127882 2dbbA 151 8.892 3b73A 111 9.95 2qenA 350 10.52 3f3xA 144 11.54 1vin 268 12.86 3cuqB 218 12.96 1mzbA 136 13.62 a.4.5.42 91497 2eq8C 40 13.77 2gqqA 163 13.89 3go5A 285 14.00 2jn6A 97 14.36 a.4.1.19 148144 3h7rA 331 14.39 1j5yA 187 14.40 a.4.5.1,d.94.2.1 71592,71593 2qlzA 232 14.75 1z6rA 406 14.77 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3i71A 68 15.17 1okrA 123 16.71 a.4.5.39 93269 1y7yA 74 18.29 a.35.1.3 122729 2w57A 150 18.41 2iwbA 246 18.48 1utxA 66 18.71 a.35.1.3 108034 3h7uA 335 18.80 3f8bA 116 19.01 2p8tA 200 19.09 a.4.5.72,d.74.4.2 149315,149316 2g9wA 138 20.09 a.4.5.39 147097 3irrA 67 20.40 1g2hA 61 21.21 a.4.1.12 60224 3majA 382 21.81 3ezfA 403 22.50 1adrA 76 22.98 a.35.1.2 17042 3cuqA 234 23.01 3eyyA 145 23.39 2bnmA 198 23.79 a.35.1.3,b.82.1.10 128835,128836 3bz6A 183 24.15 a.4.5.75,a.4.5.75 155739,155740 3iwfA 107 24.47 3gwzA 369 24.53 2zhgA 154 26.30 2j5pA 76 26.95 a.4.5.67 138050 3hhhA 116 28.80 2fjrA 189 30.03 2eq9C 41 31.50 1y9qA 192 31.81 a.35.1.8,b.82.1.15 116592,116593 2obpA 96 32.05 a.4.5.71 148718 1resA 43 32.15 a.4.1.2 16023 2w25A 150 32.96 2e7xA 150 33.79 2croA 71 34.24 a.35.1.2 17038 2cro 71 34.29 1dpuA 99 35.76 a.4.5.16 16150 1b0nA 111 35.80 a.34.1.1,a.35.1.3 17001,17064 1pp7U 131 36.28 a.4.5.44 94973 2zmeA 258 37.05 2ztgA 739 38.55 1qbjA 81 39.13 a.4.5.19 16155 1j96A 323 42.80 c.1.7.1 71616 3if0X 153 42.86 3kkzA 267 43.66 1f5qB 252 45.58 a.74.1.1,a.74.1.1 18362,18363 1r69A 69 47.30 a.35.1.2 17028 2dt5A 211 47.53 a.4.5.38,c.2.1.12 131708,131709 2eshA 118 50.19 a.4.5.61 132325 3ieyB 153 51.40 3h4gA 325 53.23 2eljA 88 53.36 1w85I 49 54.76 a.9.1.1 114347 2ictA 94 55.11 a.35.1.3 147605 1fseA 74 56.56 a.4.6.2 60000 3f7jA 276 57.33 1zljA 78 58.56 2bpsA 81 59.73 1wi9A 72 60.79 a.4.5.47 114663 1acfA 125 62.37 d.110.1.1 40882 1us0A 316 62.45 c.1.7.1 99850 2f2cA 254 63.05 a.74.1.1,a.74.1.1 132805,132806 2jt1A 77 65.01 2we5A 310 66.32 1s1pA 331 66.99 c.1.7.1 98350 2dqrA 122 67.63 1r7jA 95 68.45 a.4.5.49 104836 2wzmA 283 68.58 1aisB 200 68.65 a.74.1.2,a.74.1.2 18384,18385 2bduA 297 69.40 c.108.1.21 146135 1p4wA 99 69.76 a.4.6.2 87783 2o3fA 111 70.04 a.4.1.20 148573 2pijA 67 70.13 2v9vA 135 71.26 a.4.5.35,a.4.5.35 152809,152810 2jmlA 81 72.40 2cchB 260 74.90 a.74.1.1,a.74.1.1 130237,130238 3ln3A 324 75.10 1phnA 162 77.33 a.1.1.3 15641 3f6wA 83 79.19 1ks9A 291 80.08 a.100.1.7,c.2.1.6 68857,68858 1hlvA 131 82.06 a.4.1.7,a.4.1.7 65854,65855 1mtpA 323 82.31 e.1.1.1 85107 1vz0A 230 82.35 a.4.14.1,d.268.1.1 108929,108930 3i53A 332 83.01 1r69 69 83.67 2ebyA 113 83.80 1stzA 338 84.18 a.4.5.51,d.110.2.3 106009,106010 1hstA 90 85.41 a.4.5.13 16140 3gpvA 148 87.02 2r1jL 68 87.42 a.35.1.2 151525 1rzsA 61 89.25 a.35.1.2 105139