# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 1.10e-14 2ek5A 129 3.68e-13 2wv0A 243 1.24e-12 3ic7A 126 3.15e-12 3edpA 236 2.08e-11 1hw1A 239 3.26e-11 a.4.5.6,a.78.1.1 16111,18441 3eetA 274 3.33e-11 3bwgA 239 8.28e-11 a.4.5.6,d.190.1.2 155693,155694 2hs5A 239 4.01e-09 a.4.5.6,a.78.1.1 147379,147380 3f8mA 248 1.36e-08 2di3A 239 1.99e-08 3ihuA 222 9.33e-08 3c7jA 237 1.14e-07 3fmsA 209 1.42e-07 1fx7A 230 3.43e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 8.38e-05 2dtrA 226 0.000117 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.000223 1on2A 142 0.001354 a.4.5.24,a.76.1.1 87103,87104 2hr3A 147 0.03034 a.4.5.28 136678 2h09A 155 0.03139 2ev0A 142 0.04618 a.4.5.24,a.76.1.1 132413,132414 2cohA 202 0.05254 a.4.5.4,b.82.3.2 130677,130678 3ctaA 230 0.05703 a.4.5.28,b.43.5.2 156979,156980 2fmyA 220 0.07545 3d0sA 227 0.07691 1lj9A 144 0.09438 a.4.5.28 78035 3e97A 231 0.09622 1lnwA 147 0.09630 a.4.5.28 78104 3e6cC 250 0.1003 a.4.5.4,b.82.3.2 158038,158039 2zdbA 195 0.1023 1s3jA 155 0.1066 a.4.5.28 98437 2ethA 154 0.1335 a.4.5.28 132358 1bia 321 0.1369 2h6cA 232 0.1411 a.4.5.4,b.82.3.2 147232,147233 2a61A 145 0.1461 a.4.5.28 126187 1sfxA 109 0.1494 a.4.5.50 105505 2fbhA 146 0.1634 a.4.5.28 133245 1r1uA 106 0.1706 a.4.5.5 104771 2oqgA 114 0.1802 3e5xA 250 0.1873 1r1tA 122 0.2028 a.4.5.5 104769 3dv8A 220 0.2058 2zcwA 202 0.2108 2fbiA 142 0.2239 a.4.5.28 133246 1z91A 147 0.2384 a.4.5.28 124736 2pjpA 121 0.2463 1smtA 122 0.2523 a.4.5.5 16109 3cdhA 155 0.2553 1jgsA 138 0.2649 a.4.5.28 66683 1xd7A 145 0.2738 a.4.5.55 109566 1i6xA 209 0.2815 a.4.5.4,b.82.3.2 83673,83674 2nnnA 140 0.2879 2gxgA 146 0.3187 3broA 141 0.3412 a.4.5.28 155517 2pexA 153 0.3455 3f6oA 118 0.3681 3ecoA 139 0.4020 3f6vA 151 0.4178 2fbkA 181 0.4258 a.4.5.28 133247 3deuA 166 0.4378 a.4.5.28 157600 3fm5A 150 0.4478 3bp8A 406 0.4550 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3gw2A 108 0.4596 1yg2A 179 0.4786 a.4.5.61 116681 1wsuA 124 0.5106 a.4.5.35,a.4.5.35 121245,121246 3eqxA 373 0.5256 2f2eA 146 0.5831 a.4.5.69 132808 3bj6A 152 0.6261 2rdpA 150 0.6544 2h6bA 250 0.6842 a.4.5.4,b.82.3.2 147228,147229 1mkmA 249 0.6881 a.4.5.33,d.110.2.2 79242,79243 2o0yA 260 0.6926 2ia0A 171 0.7296 2b0lA 102 0.7580 a.4.5.66 127641 3cuoA 99 0.7591 3kfwX 247 0.7677 1zybA 232 0.7800 a.4.5.4,b.82.3.2 125815,125816 3l09A 266 0.7983 3bpvA 138 0.8177 3hsrA 140 0.8587 1u2wA 122 0.8903 a.4.5.5 119487 2v79A 135 1.006 2ivmA 150 1.023 2zkzA 99 1.023 3jthA 98 1.056 2gauA 232 1.069 a.4.5.4,b.82.3.2 134894,134895 1ulyA 192 1.099 a.4.5.58 113297 3cjnA 162 1.111 2g7uA 257 1.122 2ia2A 265 1.147 2cg4A 152 1.160 a.4.5.32,d.58.4.2 130417,130418 2frhA 127 1.170 a.4.5.28 133988 2cfxA 144 1.185 a.4.5.32,d.58.4.2 130395,130396 2nyxA 168 1.185 2fa5A 162 1.186 3jw4A 148 1.222 1ylfA 149 1.253 a.4.5.55 123648 1hw5A 210 1.263 a.4.5.4,b.82.3.2 16098,28137 3k69A 162 1.281 3g3zA 145 1.286 2cyyA 151 1.383 a.4.5.32,d.58.4.2 131028,131029 1ub9A 100 1.567 a.4.5.28 99159 3bddA 142 1.573 2bv6A 142 1.587 a.4.5.28 146218 3boqA 160 1.700 3bjaA 139 1.759 2rn7A 108 1.910 3lwfA 159 1.920 2qwwA 154 1.990 3e6mA 161 2.038 2qz8A 149 2.130 3fx3A 237 2.168 3ez2A 398 2.190 2p5vA 162 2.642 1hkqA 132 2.725 a.4.5.10 83555 3echA 142 2.728 1biaA 321 2.868 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1rztA 331 3.044 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 2pn6A 150 3.262 3gflA 146 3.280 1p4xA 250 3.346 a.4.5.28,a.4.5.28 87784,87785 2d1hA 109 3.444 a.4.5.50 131125 2fu4A 83 3.519 3gfjA 146 3.752 3gfmA 146 3.755 2hoeA 380 3.827 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1sd4A 126 4.191 a.4.5.39 105428 3h3zA 235 4.367 2bgcA 238 4.823 a.4.5.4,b.82.3.3 128458,128459 1ri7A 171 5.502 a.4.5.32,d.58.4.2 97504,97505 3i4pA 162 5.545 2fe3A 145 6.217 3k0lA 162 6.356 1lvaA 258 6.468 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1xmaA 145 6.952 a.4.5.61 115477 2dbbA 151 7.157 1tbxA 99 7.313 a.4.5.48 106748 1q1hA 110 7.950 a.4.5.41 95580 3b73A 111 7.981 1jhgA 101 8.415 a.4.12.1 19009 1mzbA 136 8.774 a.4.5.42 91497 3f3xA 144 9.211 2b5aA 77 9.249 a.35.1.3 127882 1z6rA 406 9.98 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1vin 268 10.25 2qenA 350 10.41 3cuqB 218 10.92 3i71A 68 12.10 2gqqA 163 12.57 3f8bA 116 12.58 1okrA 123 13.10 a.4.5.39 93269 3go5A 285 13.24 1j5yA 187 13.42 a.4.5.1,d.94.2.1 71592,71593 2iwbA 246 13.54 3h7rA 331 14.08 2qlzA 232 14.11 2jn6A 97 14.18 a.4.1.19 148144 2p8tA 200 14.48 a.4.5.72,d.74.4.2 149315,149316 2w57A 150 14.51 3majA 382 14.86 2eq8C 40 15.32 2g9wA 138 15.45 a.4.5.39 147097 3irrA 67 16.16 3eyyA 145 16.49 1utxA 66 17.13 a.35.1.3 108034 1y7yA 74 17.53 a.35.1.3 122729 3ezfA 403 19.16 3h7uA 335 19.58 1g2hA 61 21.74 a.4.1.12 60224 2zhgA 154 22.72 3cuqA 234 22.97 2w25A 150 23.14 1adrA 76 23.65 a.35.1.2 17042 2j5pA 76 23.89 a.4.5.67 138050 2bnmA 198 25.28 a.35.1.3,b.82.1.10 128835,128836 2e7xA 150 26.31 3bz6A 183 26.46 a.4.5.75,a.4.5.75 155739,155740 2ztgA 739 28.06 3gwzA 369 28.11 3hhhA 116 28.16 3iwfA 107 28.52 1resA 43 28.80 a.4.1.2 16023 2obpA 96 29.02 a.4.5.71 148718 1y9qA 192 29.09 a.35.1.8,b.82.1.15 116592,116593 2fjrA 189 32.84 1qbjA 81 32.89 a.4.5.19 16155 1dpuA 99 35.65 a.4.5.16 16150 1pp7U 131 37.85 a.4.5.44 94973 2eq9C 41 38.62 1j96A 323 40.17 c.1.7.1 71616 1b0nA 111 40.44 a.34.1.1,a.35.1.3 17001,17064 2zmeA 258 41.13 2croA 71 41.24 a.35.1.2 17038 1f5qB 252 42.17 a.74.1.1,a.74.1.1 18362,18363 3h4gA 325 43.06 2cro 71 43.09 2jt1A 77 43.41 1wi9A 72 45.65 a.4.5.47 114663 1aisB 200 47.87 a.74.1.2,a.74.1.2 18384,18385 1zljA 78 48.13 2r1jL 68 48.18 a.35.1.2 151525 2eshA 118 49.43 a.4.5.61 132325 2hiyA 183 49.69 d.356.1.1 147288 2dt5A 211 50.47 a.4.5.38,c.2.1.12 131708,131709 1r69A 69 52.72 a.35.1.2 17028 1vbuA 328 52.88 c.1.8.3 119963 1fseA 74 53.83 a.4.6.2 60000 3if0X 153 55.54 2cchB 260 56.91 a.74.1.1,a.74.1.1 130237,130238 2bduA 297 58.25 c.108.1.21 146135 3kkzA 267 58.89 2hm7A 310 58.93 1us0A 316 59.54 c.1.7.1 99850 2f2cA 254 59.64 a.74.1.1,a.74.1.1 132805,132806 1hstA 90 60.30 a.4.5.13 16140 2ictA 94 60.97 a.35.1.3 147605 3ieyB 153 61.09 3f7jA 276 61.40 3edyA 544 61.41 2wzmA 283 62.30 1p4wA 99 62.80 a.4.6.2 87783 1s1pA 331 65.15 c.1.7.1 98350 2eljA 88 68.04 1ks9A 291 68.52 a.100.1.7,c.2.1.6 68857,68858 2dqlA 115 68.70 1w85I 49 69.21 a.9.1.1 114347 2e1nA 138 69.42 2bpsA 81 69.50 3hikA 237 70.35 2jmlA 81 70.53 2vliA 183 71.62 2o3fA 111 72.00 a.4.1.20 148573 3hihA 223 74.26 1hlvA 131 75.83 a.4.1.7,a.4.1.7 65854,65855 1stzA 338 77.02 a.4.5.51,d.110.2.3 106009,106010 1acfA 125 77.16 d.110.1.1 40882 1fh9A 312 78.72 c.1.8.3 28913 1phnA 162 79.71 a.1.1.3 15641 2bl0B 145 80.44 1z1bA 356 80.69 d.10.1.4,d.163.1.1 124346,124347 2we5A 310 80.72 3ln3A 324 81.34 1rzsA 61 83.30 a.35.1.2 105139 3f6wA 83 83.53 3i53A 332 84.66 2z99A 219 85.15 2ebyA 113 85.47 2dqrA 122 87.10 1sfuA 75 88.96 a.4.5.19 105503