# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 1.21e-13 2ek5A 129 2.66e-12 2wv0A 243 6.66e-12 3ic7A 126 2.04e-11 3edpA 236 1.26e-10 1hw1A 239 1.63e-10 a.4.5.6,a.78.1.1 16111,18441 3eetA 274 1.71e-10 3bwgA 239 5.00e-10 a.4.5.6,d.190.1.2 155693,155694 2hs5A 239 1.75e-08 a.4.5.6,a.78.1.1 147379,147380 3f8mA 248 5.08e-08 2di3A 239 8.13e-08 3ihuA 222 3.04e-07 3c7jA 237 3.43e-07 3fmsA 209 4.80e-07 1fx7A 230 0.000117 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 0.000212 2dtrA 226 0.000311 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.000664 1on2A 142 0.003580 a.4.5.24,a.76.1.1 87103,87104 2h09A 155 0.05672 2hr3A 147 0.06199 a.4.5.28 136678 2ev0A 142 0.08936 a.4.5.24,a.76.1.1 132413,132414 2cohA 202 0.0996 a.4.5.4,b.82.3.2 130677,130678 3ctaA 230 0.1131 a.4.5.28,b.43.5.2 156979,156980 1lnwA 147 0.1460 a.4.5.28 78104 3d0sA 227 0.1474 3e6cC 250 0.1626 a.4.5.4,b.82.3.2 158038,158039 1lj9A 144 0.1639 a.4.5.28 78035 2zdbA 195 0.1654 2fmyA 220 0.1667 1s3jA 155 0.1753 a.4.5.28 98437 2h6cA 232 0.1920 a.4.5.4,b.82.3.2 147232,147233 1z91A 147 0.1928 a.4.5.28 124736 3e97A 231 0.2244 2a61A 145 0.2394 a.4.5.28 126187 2ethA 154 0.2500 a.4.5.28 132358 1bia 321 0.2560 2oqgA 114 0.2609 1sfxA 109 0.2638 a.4.5.50 105505 2fbhA 146 0.2664 a.4.5.28 133245 2fbiA 142 0.3233 a.4.5.28 133246 2pexA 153 0.3366 1r1uA 106 0.3424 a.4.5.5 104771 3e5xA 250 0.3430 3dv8A 220 0.3628 1smtA 122 0.3893 a.4.5.5 16109 1r1tA 122 0.3907 a.4.5.5 104769 2zcwA 202 0.3914 1i6xA 209 0.4043 a.4.5.4,b.82.3.2 83673,83674 1xd7A 145 0.4204 a.4.5.55 109566 2fbkA 181 0.4396 a.4.5.28 133247 2pjpA 121 0.4655 1jgsA 138 0.4732 a.4.5.28 66683 2nnnA 140 0.5069 3broA 141 0.5265 a.4.5.28 155517 3cdhA 155 0.5456 1yg2A 179 0.5556 a.4.5.61 116681 3f6oA 118 0.5563 2gxgA 146 0.5766 3deuA 166 0.6656 a.4.5.28 157600 3gw2A 108 0.7447 3bp8A 406 0.7474 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3fm5A 150 0.7530 3ecoA 139 0.7668 3cuoA 99 0.8148 3f6vA 151 0.8739 3hsrA 140 0.9238 2bv6A 142 0.9284 a.4.5.28 146218 3bj6A 152 0.9789 3l09A 266 0.9821 2h6bA 250 1.000 a.4.5.4,b.82.3.2 147228,147229 1u2wA 122 1.014 a.4.5.5 119487 1wsuA 124 1.047 a.4.5.35,a.4.5.35 121245,121246 3eqxA 373 1.057 2rdpA 150 1.068 2f2eA 146 1.100 a.4.5.69 132808 2v79A 135 1.181 2zkzA 99 1.230 3k69A 162 1.239 3kfwX 247 1.246 2b0lA 102 1.336 a.4.5.66 127641 2o0yA 260 1.356 3bpvA 138 1.358 2nyxA 168 1.364 1mkmA 249 1.396 a.4.5.33,d.110.2.2 79242,79243 1zybA 232 1.449 a.4.5.4,b.82.3.2 125815,125816 1ulyA 192 1.480 a.4.5.58 113297 2fa5A 162 1.524 2ia0A 171 1.574 2cg4A 152 1.607 a.4.5.32,d.58.4.2 130417,130418 2g7uA 257 1.636 2ia2A 265 1.676 3bjaA 139 1.686 3cjnA 162 1.687 3g3zA 145 1.760 2frhA 127 1.808 a.4.5.28 133988 3bddA 142 1.855 2gauA 232 1.858 a.4.5.4,b.82.3.2 134894,134895 3boqA 160 1.859 2cfxA 144 1.944 a.4.5.32,d.58.4.2 130395,130396 3jthA 98 1.982 3jw4A 148 2.102 1ylfA 149 2.115 a.4.5.55 123648 2ivmA 150 2.211 1hw5A 210 2.321 a.4.5.4,b.82.3.2 16098,28137 1ub9A 100 2.377 a.4.5.28 99159 1hkqA 132 2.379 a.4.5.10 83555 2cyyA 151 2.405 a.4.5.32,d.58.4.2 131028,131029 3fx3A 237 2.406 3e6mA 161 2.637 2rn7A 108 2.694 2qz8A 149 2.954 2qwwA 154 3.104 2p5vA 162 3.542 3ez2A 398 3.652 3lwfA 159 4.150 1p4xA 250 4.157 a.4.5.28,a.4.5.28 87784,87785 2pn6A 150 4.298 2fu4A 83 4.680 3echA 142 4.987 2bgcA 238 5.156 a.4.5.4,b.82.3.3 128458,128459 1biaA 321 5.184 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 3gflA 146 6.029 3h3zA 235 6.031 3gfjA 146 6.393 2hoeA 380 6.544 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2d1hA 109 6.736 a.4.5.50 131125 3gfmA 146 7.014 1sd4A 126 7.285 a.4.5.39 105428 1jhgA 101 7.351 a.4.12.1 19009 1ri7A 171 8.017 a.4.5.32,d.58.4.2 97504,97505 1rztA 331 8.268 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 3i4pA 162 8.295 3k0lA 162 8.498 1q1hA 110 9.399 a.4.5.41 95580 1z6rA 406 10.24 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2dbbA 151 10.46 1j5yA 187 10.69 a.4.5.1,d.94.2.1 71592,71593 1lvaA 258 11.13 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2fe3A 145 11.26 1mzbA 136 11.50 a.4.5.42 91497 2b5aA 77 11.58 a.35.1.3 127882 1xmaA 145 11.82 a.4.5.61 115477 1vin 268 12.04 1tbxA 99 12.61 a.4.5.48 106748 3b73A 111 13.72 3f3xA 144 14.12 2qenA 350 14.43 2eq8C 40 15.85 2gqqA 163 16.96 3h7rA 331 17.40 2qlzA 232 17.49 1okrA 123 17.99 a.4.5.39 93269 2p8tA 200 19.82 a.4.5.72,d.74.4.2 149315,149316 3cuqB 218 20.31 3irrA 67 20.78 2jn6A 97 21.02 a.4.1.19 148144 1utxA 66 21.13 a.35.1.3 108034 2w57A 150 22.63 3h7uA 335 22.83 3i71A 68 23.79 1y7yA 74 24.07 a.35.1.3 122729 3go5A 285 24.30 3eyyA 145 25.08 2g9wA 138 25.14 a.4.5.39 147097 2iwbA 246 25.51 3f8bA 116 26.19 1adrA 76 26.64 a.35.1.2 17042 1g2hA 61 26.74 a.4.1.12 60224 2bnmA 198 27.47 a.35.1.3,b.82.1.10 128835,128836 3ezfA 403 27.75 3iwfA 107 28.65 2e7xA 150 30.09 3cuqA 234 31.05 3bz6A 183 33.60 a.4.5.75,a.4.5.75 155739,155740 3gwzA 369 34.81 2eq9C 41 35.24 3majA 382 35.59 2croA 71 36.20 a.35.1.2 17038 2cro 71 37.36 2fjrA 189 37.75 3hhhA 116 39.91 2j5pA 76 40.79 a.4.5.67 138050 2w25A 150 41.65 2eshA 118 41.90 a.4.5.61 132325 1y9qA 192 42.91 a.35.1.8,b.82.1.15 116592,116593 1resA 43 45.74 a.4.1.2 16023 2obpA 96 46.31 a.4.5.71 148718 2z99A 219 46.44 1pp7U 131 48.42 a.4.5.44 94973 1b0nA 111 48.57 a.34.1.1,a.35.1.3 17001,17064 1j96A 323 48.61 c.1.7.1 71616 1r69A 69 51.00 a.35.1.2 17028 1qbjA 81 52.23 a.4.5.19 16155 2zmeA 258 52.74 1f5qB 252 53.10 a.74.1.1,a.74.1.1 18362,18363 3kkzA 267 53.42 2zhgA 154 53.95 1wi9A 72 54.71 a.4.5.47 114663 2r1jL 68 55.92 a.35.1.2 151525 1fh9A 312 57.57 c.1.8.3 28913 1w85I 49 58.25 a.9.1.1 114347 2vliA 183 60.20 2ztgA 739 60.97 1dpuA 99 61.34 a.4.5.16 16150 2f2cA 254 61.75 a.74.1.1,a.74.1.1 132805,132806 2eljA 88 64.17 1fseA 74 65.13 a.4.6.2 60000 2ictA 94 65.72 a.35.1.3 147605 2bpsA 81 66.50 1acfA 125 66.55 d.110.1.1 40882 2bl0B 145 66.94 1aisB 200 67.30 a.74.1.2,a.74.1.2 18384,18385 1hstA 90 67.98 a.4.5.13 16140 2cchB 260 68.06 a.74.1.1,a.74.1.1 130237,130238 1ks9A 291 68.60 a.100.1.7,c.2.1.6 68857,68858 3ieyB 153 68.62 2f5yA 91 69.26 b.36.1.1 133015 2hiyA 183 71.10 d.356.1.1 147288 1vbuA 328 71.49 c.1.8.3 119963 3f6wA 83 72.12 1zljA 78 73.01 3if0X 153 73.48 2we5A 310 73.70 2dqrA 122 77.82 1us0A 316 78.39 c.1.7.1 99850 2bduA 297 78.46 c.108.1.21 146135 3elkA 117 78.50 1p4wA 99 79.20 a.4.6.2 87783 2dt5A 211 80.35 a.4.5.38,c.2.1.12 131708,131709 1s1pA 331 83.74 c.1.7.1 98350 1z1bA 356 85.16 d.10.1.4,d.163.1.1 124346,124347 3edyA 544 86.38 1g2rA 100 86.99 d.192.1.1 60231 3mjdA 232 87.10 2jt1A 77 87.53