# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 4.11e-15 2ek5A 129 1.66e-13 2wv0A 243 6.09e-13 3ic7A 126 1.69e-12 3edpA 236 6.31e-12 3eetA 274 1.96e-11 1hw1A 239 2.75e-11 a.4.5.6,a.78.1.1 16111,18441 3bwgA 239 1.06e-10 a.4.5.6,d.190.1.2 155693,155694 2hs5A 239 4.08e-09 a.4.5.6,a.78.1.1 147379,147380 3f8mA 248 1.16e-08 2di3A 239 2.04e-08 3ihuA 222 7.93e-08 3fmsA 209 1.09e-07 3c7jA 237 1.15e-07 1fx7A 230 4.83e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 0.000101 2dtrA 226 0.000159 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.000407 1on2A 142 0.002837 a.4.5.24,a.76.1.1 87103,87104 2hr3A 147 0.02952 a.4.5.28 136678 2h09A 155 0.06022 2cohA 202 0.07282 a.4.5.4,b.82.3.2 130677,130678 2ev0A 142 0.09284 a.4.5.24,a.76.1.1 132413,132414 2fmyA 220 0.09488 3ctaA 230 0.1099 a.4.5.28,b.43.5.2 156979,156980 3e6cC 250 0.1337 a.4.5.4,b.82.3.2 158038,158039 3d0sA 227 0.1361 2h6cA 232 0.1579 a.4.5.4,b.82.3.2 147232,147233 1sfxA 109 0.1778 a.4.5.50 105505 1lj9A 144 0.1895 a.4.5.28 78035 1lnwA 147 0.2146 a.4.5.28 78104 2zdbA 195 0.2190 2oqgA 114 0.2197 3e97A 231 0.2341 3dv8A 220 0.2449 1bia 321 0.2567 3e5xA 250 0.2603 2ethA 154 0.2641 a.4.5.28 132358 2fbhA 146 0.2720 a.4.5.28 133245 1r1uA 106 0.2777 a.4.5.5 104771 1r1tA 122 0.2817 a.4.5.5 104769 1smtA 122 0.2962 a.4.5.5 16109 1s3jA 155 0.3584 a.4.5.28 98437 2a61A 145 0.3807 a.4.5.28 126187 2zcwA 202 0.3920 1z91A 147 0.4105 a.4.5.28 124736 2fbiA 142 0.4178 a.4.5.28 133246 1wsuA 124 0.4520 a.4.5.35,a.4.5.35 121245,121246 2pexA 153 0.4851 1u2wA 122 0.4896 a.4.5.5 119487 3hsrA 140 0.5153 2pjpA 121 0.5613 1i6xA 209 0.5647 a.4.5.4,b.82.3.2 83673,83674 3f6oA 118 0.5901 3f6vA 151 0.6223 3bp8A 406 0.6989 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2gxgA 146 0.7020 2f2eA 146 0.7480 a.4.5.69 132808 3cdhA 155 0.7593 2rdpA 150 0.8039 1jgsA 138 0.8153 a.4.5.28 66683 2fbkA 181 0.8478 a.4.5.28 133247 3gw2A 108 0.8932 3l09A 266 0.9056 3ecoA 139 0.9185 3bj6A 152 0.9344 3broA 141 0.9386 a.4.5.28 155517 1mkmA 249 0.9644 a.4.5.33,d.110.2.2 79242,79243 1yg2A 179 1.055 a.4.5.61 116681 2nnnA 140 1.059 1hkqA 132 1.062 a.4.5.10 83555 2qz8A 149 1.089 2gauA 232 1.105 a.4.5.4,b.82.3.2 134894,134895 3cuoA 99 1.108 1ulyA 192 1.220 a.4.5.58 113297 2d1hA 109 1.232 a.4.5.50 131125 2ia2A 265 1.295 2bv6A 142 1.326 a.4.5.28 146218 3deuA 166 1.327 a.4.5.28 157600 2g7uA 257 1.329 2b0lA 102 1.377 a.4.5.66 127641 2fa5A 162 1.386 2o0yA 260 1.445 3k69A 162 1.446 2v79A 135 1.446 2h6bA 250 1.593 a.4.5.4,b.82.3.2 147228,147229 3boqA 160 1.688 1zybA 232 1.715 a.4.5.4,b.82.3.2 125815,125816 2cfxA 144 1.743 a.4.5.32,d.58.4.2 130395,130396 2ia0A 171 1.751 3kfwX 247 1.919 3bpvA 138 1.955 2nyxA 168 1.983 2zkzA 99 2.099 1xd7A 145 2.118 a.4.5.55 109566 3fm5A 150 2.177 3bddA 142 2.192 3g3zA 145 2.245 2cg4A 152 2.402 a.4.5.32,d.58.4.2 130417,130418 2ivmA 150 2.409 2rn7A 108 2.457 3jthA 98 2.542 1hw5A 210 2.737 a.4.5.4,b.82.3.2 16098,28137 1ylfA 149 2.789 a.4.5.55 123648 3bjaA 139 2.963 2cyyA 151 3.375 a.4.5.32,d.58.4.2 131028,131029 2qwwA 154 3.533 2frhA 127 3.592 a.4.5.28 133988 3jw4A 148 3.643 1ub9A 100 3.804 a.4.5.28 99159 2pn6A 150 4.433 3e6mA 161 4.893 2p5vA 162 4.959 3cjnA 162 5.036 2bgcA 238 5.254 a.4.5.4,b.82.3.3 128458,128459 3lwfA 159 5.290 3fx3A 237 6.225 1p4xA 250 6.604 a.4.5.28,a.4.5.28 87784,87785 3gfmA 146 6.812 3gfjA 146 6.927 3gflA 146 6.938 1z6rA 406 7.159 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1lvaA 258 7.527 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1okrA 123 7.619 a.4.5.39 93269 1biaA 321 7.950 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1sd4A 126 8.259 a.4.5.39 105428 3ez2A 398 8.855 2dbbA 151 8.953 1rztA 331 8.982 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 2fu4A 83 10.44 3eqxA 373 10.84 1j5yA 187 11.24 a.4.5.1,d.94.2.1 71592,71593 2fe3A 145 11.35 1q1hA 110 11.92 a.4.5.41 95580 3echA 142 12.01 2eq8C 40 12.25 3b73A 111 13.27 1jhgA 101 13.72 a.4.12.1 19009 2qlzA 232 14.42 2ztgA 739 15.40 1tbxA 99 15.41 a.4.5.48 106748 3h3zA 235 16.05 1utxA 66 17.32 a.35.1.3 108034 3irrA 67 17.96 3cuqB 218 18.79 3i4pA 162 18.86 2jn6A 97 19.83 a.4.1.19 148144 3h7rA 331 21.66 3go5A 285 21.73 2p8tA 200 21.78 a.4.5.72,d.74.4.2 149315,149316 2iwbA 246 23.72 3i71A 68 25.22 1xmaA 145 25.39 a.4.5.61 115477 1y7yA 74 25.84 a.35.1.3 122729 1mzbA 136 26.03 a.4.5.42 91497 1vin 268 26.18 2bnmA 198 26.88 a.35.1.3,b.82.1.10 128835,128836 3eyyA 145 26.94 3k0lA 162 27.32 3gwzA 369 29.35 3if0X 153 30.90 2b5aA 77 31.96 a.35.1.3 127882 3f3xA 144 32.12 2e7xA 150 32.96 3h7uA 335 34.32 1g2hA 61 34.53 a.4.1.12 60224 1ri7A 171 34.69 a.4.5.32,d.58.4.2 97504,97505 3iwfA 107 34.74 3ezfA 403 36.11 1f5qB 252 36.98 a.74.1.1,a.74.1.1 18362,18363 2croA 71 37.72 a.35.1.2 17038 1adrA 76 38.21 a.35.1.2 17042 1r69A 69 38.41 a.35.1.2 17028 2w57A 150 38.67 2hoeA 380 38.67 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2pijA 67 38.75 2cro 71 38.89 1b0nA 111 39.79 a.34.1.1,a.35.1.3 17001,17064 2eq9C 41 40.65 1r7jA 95 42.43 a.4.5.49 104836 1w85I 49 49.84 a.9.1.1 114347 3kkzA 267 49.92 1ks9A 291 50.43 a.100.1.7,c.2.1.6 68857,68858 1qbjA 81 50.64 a.4.5.19 16155 3ieyB 153 50.98 2qenA 350 54.63 3h4gA 325 55.13 2obpA 96 56.61 a.4.5.71 148718 1y9qA 192 57.44 a.35.1.8,b.82.1.15 116592,116593 2r3sA 335 58.11 3bz6A 183 59.83 a.4.5.75,a.4.5.75 155739,155740 3ivpA 126 60.32 3majA 382 60.82 2epiA 100 62.20 2r1jL 68 62.42 a.35.1.2 151525 2hiyA 183 66.42 d.356.1.1 147288 2o3fA 111 66.82 a.4.1.20 148573 2dqrA 122 67.15 3f8bA 116 67.48 2eshA 118 69.10 a.4.5.61 132325 2gqqA 163 69.16 1j96A 323 71.57 c.1.7.1 71616 1aisB 200 72.08 a.74.1.2,a.74.1.2 18384,18385 1dpuA 99 76.27 a.4.5.16 16150 2e1nA 138 76.76 1us0A 316 76.93 c.1.7.1 99850 2j5pA 76 77.14 a.4.5.67 138050 2dt5A 211 78.95 a.4.5.38,c.2.1.12 131708,131709 2fjrA 189 79.13 2zhgA 154 80.83 1resA 43 82.00 a.4.1.2 16023 3hhhA 116 82.03 1pp7U 131 85.21 a.4.5.44 94973 2jt1A 77 86.35 2vliA 183 86.65 2ip2A 334 88.13 3edyA 544 88.39 1qzzA 374 89.38 a.4.5.29,c.66.1.12 96719,96720 1fseA 74 89.99 a.4.6.2 60000