# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 1.92e-11 3ic7A 126 3.06e-10 2ek5A 129 3.65e-10 2wv0A 243 1.51e-09 1hw1A 239 8.97e-09 a.4.5.6,a.78.1.1 16111,18441 3edpA 236 1.64e-08 3eetA 274 3.33e-08 3bwgA 239 1.43e-07 a.4.5.6,d.190.1.2 155693,155694 2hs5A 239 7.34e-07 a.4.5.6,a.78.1.1 147379,147380 2di3A 239 1.94e-06 3f8mA 248 5.06e-06 3ihuA 222 6.54e-06 3c7jA 237 9.69e-06 3fmsA 209 1.12e-05 2dtr 226 0.001699 2dtrA 226 0.002394 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fx7A 230 0.003777 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 0.02210 1on2A 142 0.02212 a.4.5.24,a.76.1.1 87103,87104 2h09A 155 0.1441 2hr3A 147 0.2116 a.4.5.28 136678 2bv6A 142 0.2455 a.4.5.28 146218 3ctaA 230 0.2554 a.4.5.28,b.43.5.2 156979,156980 2ev0A 142 0.3262 a.4.5.24,a.76.1.1 132413,132414 3e5xA 250 0.5053 1lj9A 144 0.5679 a.4.5.28 78035 2fbhA 146 0.5828 a.4.5.28 133245 1s3jA 155 0.5869 a.4.5.28 98437 1lnwA 147 0.6082 a.4.5.28 78104 1sfxA 109 0.6763 a.4.5.50 105505 2fmyA 220 0.6808 1z91A 147 0.7379 a.4.5.28 124736 2pexA 153 0.7417 2h6cA 232 0.7428 a.4.5.4,b.82.3.2 147232,147233 3e6cC 250 0.7445 a.4.5.4,b.82.3.2 158038,158039 2oqgA 114 0.7790 3e97A 231 0.9099 2ethA 154 0.9754 a.4.5.28 132358 2a61A 145 1.006 a.4.5.28 126187 1xd7A 145 1.046 a.4.5.55 109566 3hsrA 140 1.056 1r1tA 122 1.103 a.4.5.5 104769 1smtA 122 1.117 a.4.5.5 16109 1r1uA 106 1.141 a.4.5.5 104771 3deuA 166 1.163 a.4.5.28 157600 2zdbA 195 1.164 3gw2A 108 1.260 2d1hA 109 1.327 a.4.5.50 131125 2qlzA 232 1.366 3dv8A 220 1.373 2fbiA 142 1.531 a.4.5.28 133246 2fbkA 181 1.536 a.4.5.28 133247 2ia2A 265 1.684 3f6oA 118 1.727 3fm5A 150 1.763 2qwwA 154 1.856 2pjpA 121 1.936 2gxgA 146 1.936 1ulyA 192 1.991 a.4.5.58 113297 1wsuA 124 2.030 a.4.5.35,a.4.5.35 121245,121246 3f6vA 151 2.124 3boqA 160 2.129 3cdhA 155 2.286 3d0sA 227 2.291 1u2wA 122 2.346 a.4.5.5 119487 1yg2A 179 2.425 a.4.5.61 116681 1jgsA 138 2.503 a.4.5.28 66683 1i6xA 209 2.617 a.4.5.4,b.82.3.2 83673,83674 2rdpA 150 2.622 2b0lA 102 2.625 a.4.5.66 127641 2nnnA 140 2.637 3broA 141 2.742 a.4.5.28 155517 3ecoA 139 2.752 3cuoA 99 2.907 3bj6A 152 2.942 3kfwX 247 3.082 2gauA 232 3.156 a.4.5.4,b.82.3.2 134894,134895 2cg4A 152 3.260 a.4.5.32,d.58.4.2 130417,130418 3cjnA 162 3.518 2v79A 135 3.658 1zybA 232 3.955 a.4.5.4,b.82.3.2 125815,125816 2fa5A 162 4.086 2nyxA 168 4.168 3hy0A 441 4.230 1ylfA 149 4.347 a.4.5.55 123648 3bpvA 138 4.634 3g3zA 145 4.693 3jthA 98 5.458 2g7uA 257 5.598 2ia0A 171 5.705 3lwfA 159 5.729 3echA 142 5.789 2zkzA 99 6.603 2cfxA 144 6.822 a.4.5.32,d.58.4.2 130395,130396 2frhA 127 6.877 a.4.5.28 133988 2zhgA 154 6.918 2ivmA 150 7.156 2zcwA 202 7.510 3bjaA 139 7.594 1hkqA 132 7.607 a.4.5.10 83555 3jw4A 148 7.884 1ub9A 100 8.837 a.4.5.28 99159 1bia 321 9.030 2o0yA 260 9.100 3e6mA 161 9.245 2cyyA 151 9.278 a.4.5.32,d.58.4.2 131028,131029 2f2eA 146 9.450 a.4.5.69 132808 2h6bA 250 9.522 a.4.5.4,b.82.3.2 147228,147229 3gpvA 148 9.847 1hw5A 210 10.23 a.4.5.4,b.82.3.2 16098,28137 3i53A 332 10.39 3fx3A 237 10.52 3gp4A 142 10.73 1sd4A 126 11.80 a.4.5.39 105428 1j5yA 187 12.02 a.4.5.1,d.94.2.1 71592,71593 2ccmA 191 12.61 1p4xA 250 12.61 a.4.5.28,a.4.5.28 87784,87785 3gwzA 369 12.82 3gfmA 146 12.84 3gfjA 146 13.02 3gflA 146 13.11 2p5vA 162 14.85 1okrA 123 14.88 a.4.5.39 93269 3bddA 142 14.99 2pn6A 150 15.21 3dp7A 363 15.86 1lvaA 258 16.83 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 3go5A 285 18.23 3h3zA 235 18.25 1mkmA 249 18.33 a.4.5.33,d.110.2.2 79242,79243 1qmeA 702 18.64 d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 2rn7A 108 20.38 2qz8A 149 20.94 3eqxA 373 21.34 2dqrA 122 23.30 2fu4A 83 24.17 1j96A 323 24.30 c.1.7.1 71616 2dbbA 151 24.57 3k0lA 162 28.17 2fe3A 145 28.71 3gu2A 336 29.21 3iwfA 107 29.37 1jhgA 101 29.88 a.4.12.1 19009 3b73A 111 30.63 1q1hA 110 30.93 a.4.5.41 95580 3ln3A 324 31.04 1vin 268 31.10 2vprA 207 31.39 3i4pA 162 32.97 1xmaA 145 33.96 a.4.5.61 115477 2f2cA 254 34.41 a.74.1.1,a.74.1.1 132805,132806 2cohA 202 34.85 a.4.5.4,b.82.3.2 130677,130678 3f3xA 144 35.84 1z1bA 356 36.36 d.10.1.4,d.163.1.1 124346,124347 1ks9A 291 36.60 a.100.1.7,c.2.1.6 68857,68858 1mi3A 322 37.25 c.1.7.1 91274 3h7rA 331 40.16 1tbxA 99 40.31 a.4.5.48 106748 3k69A 162 41.14 3clmA 352 41.60 3c8fA 245 41.60 2ek0A 90 41.95 1z6rA 406 42.97 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3irrA 67 43.10 1ri7A 171 43.52 a.4.5.32,d.58.4.2 97504,97505 1r7jA 95 44.71 a.4.5.49 104836 2bl0B 145 44.82 1wb0A 445 45.55 c.1.8.5,d.26.3.1 120825,120826 2iwbA 246 46.05 3f8bA 116 46.35 2w57A 150 46.47 1mzbA 136 47.06 a.4.5.42 91497 2eq8C 40 48.77 2qenA 350 48.79 3lfxA 319 48.82 1s1pA 331 49.54 c.1.7.1 98350 1rztA 331 50.60 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 3fldA 153 52.13 2j5pA 76 52.48 a.4.5.67 138050 2cchB 260 52.61 a.74.1.1,a.74.1.1 130237,130238 1q06A 135 53.18 a.6.1.3 95493 2v2fF 390 54.22 1utxA 66 54.53 a.35.1.3 108034 3ez2A 398 54.74 3hbxA 502 55.27 1l5aA 436 56.92 c.43.1.2,c.43.1.2 75923,75924 3fvhA 237 58.42 2wnsA 205 58.68 1p1xA 260 58.96 c.1.10.1 104060 3cuqB 218 61.27 1zgdA 312 63.59 1ooyA 481 63.99 c.124.1.3,c.124.1.2 93388,93389 2ja2A 498 66.09 2b5aA 77 66.20 a.35.1.3 127882 2p8tA 200 66.35 a.4.5.72,d.74.4.2 149315,149316 2waeA 680 66.81 1y14B 171 66.88 b.40.4.5,d.230.1.1 116323,116324 3h7uA 335 67.15 2gqqA 163 68.00 1g2hA 61 68.48 a.4.1.12 60224 3msrA 363 69.10 2jn6A 97 69.43 a.4.1.19 148144 1y7yA 74 70.45 a.35.1.3 122729 2epiA 100 72.16 1f5qB 252 72.44 a.74.1.1,a.74.1.1 18362,18363 3i71A 68 72.48 2bnmA 198 73.58 a.35.1.3,b.82.1.10 128835,128836 1y6vA 449 74.42 c.76.1.1 122674 3k35A 318 75.09 2vliA 183 76.68 1r9lA 309 78.44 c.94.1.1 97262 3bz6A 183 80.50 a.4.5.75,a.4.5.75 155739,155740 2eshA 118 81.77 a.4.5.61 132325 1zcjA 463 83.13 2bgcA 238 84.50 a.4.5.4,b.82.3.3 128458,128459 3majA 382 84.55 2e7xA 150 85.69 1y9qA 192 85.82 a.35.1.8,b.82.1.15 116592,116593 3htwA 328 86.67 2eplX 627 86.96 2zndA 172 87.51 2e1nA 138 88.02 1adrA 76 88.51 a.35.1.2 17042 1b0nA 111 89.69 a.34.1.1,a.35.1.3 17001,17064 2yzhA 171 89.78