# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 6.30e-15 2ek5A 129 2.60e-13 2wv0A 243 8.99e-13 3ic7A 126 1.80e-12 3edpA 236 7.59e-12 3eetA 274 1.93e-11 1hw1A 239 3.06e-11 a.4.5.6,a.78.1.1 16111,18441 3bwgA 239 1.21e-10 a.4.5.6,d.190.1.2 155693,155694 2hs5A 239 4.03e-09 a.4.5.6,a.78.1.1 147379,147380 3f8mA 248 1.26e-08 2di3A 239 2.52e-08 3ihuA 222 8.07e-08 3c7jA 237 1.13e-07 3fmsA 209 1.56e-07 1fx7A 230 4.64e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 0.000108 2dtrA 226 0.000165 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.000361 1on2A 142 0.002892 a.4.5.24,a.76.1.1 87103,87104 2hr3A 147 0.03731 a.4.5.28 136678 2h09A 155 0.05672 2ev0A 142 0.06427 a.4.5.24,a.76.1.1 132413,132414 2cohA 202 0.08835 a.4.5.4,b.82.3.2 130677,130678 3ctaA 230 0.09503 a.4.5.28,b.43.5.2 156979,156980 2fmyA 220 0.1159 1sfxA 109 0.1411 a.4.5.50 105505 1lj9A 144 0.1663 a.4.5.28 78035 1lnwA 147 0.1720 a.4.5.28 78104 3e6cC 250 0.1725 a.4.5.4,b.82.3.2 158038,158039 3d0sA 227 0.1745 2oqgA 114 0.1786 2h6cA 232 0.2000 a.4.5.4,b.82.3.2 147232,147233 1r1tA 122 0.2306 a.4.5.5 104769 1smtA 122 0.2334 a.4.5.5 16109 2fbhA 146 0.2335 a.4.5.28 133245 2zdbA 195 0.2373 1bia 321 0.2414 1r1uA 106 0.2417 a.4.5.5 104771 3e97A 231 0.2609 2ethA 154 0.2656 a.4.5.28 132358 3e5xA 250 0.2931 2a61A 145 0.3090 a.4.5.28 126187 1s3jA 155 0.3306 a.4.5.28 98437 3dv8A 220 0.3703 1z91A 147 0.3964 a.4.5.28 124736 2fbkA 181 0.4001 a.4.5.28 133247 2fbiA 142 0.4415 a.4.5.28 133246 2zcwA 202 0.4731 3f6oA 118 0.5165 3f6vA 151 0.5495 1u2wA 122 0.5509 a.4.5.5 119487 3cdhA 155 0.5919 2pjpA 121 0.6026 2gxgA 146 0.6174 2f2eA 146 0.6636 a.4.5.69 132808 1wsuA 124 0.6775 a.4.5.35,a.4.5.35 121245,121246 3gw2A 108 0.7070 1jgsA 138 0.7518 a.4.5.28 66683 2pexA 153 0.7674 3bp8A 406 0.7831 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3broA 141 0.7907 a.4.5.28 155517 3cuoA 99 0.8284 3hsrA 140 0.8549 3ecoA 139 0.8663 2rdpA 150 0.8941 3bj6A 152 0.9122 1ulyA 192 0.9575 a.4.5.58 113297 1i6xA 209 0.9577 a.4.5.4,b.82.3.2 83673,83674 2nnnA 140 0.9581 3l09A 266 1.015 1yg2A 179 1.069 a.4.5.61 116681 3k69A 162 1.312 2b0lA 102 1.333 a.4.5.66 127641 2bv6A 142 1.386 a.4.5.28 146218 2d1hA 109 1.393 a.4.5.50 131125 3fm5A 150 1.405 2gauA 232 1.408 a.4.5.4,b.82.3.2 134894,134895 1mkmA 249 1.460 a.4.5.33,d.110.2.2 79242,79243 2zkzA 99 1.500 2v79A 135 1.518 2qz8A 149 1.575 2o0yA 260 1.641 2g7uA 257 1.652 3deuA 166 1.666 a.4.5.28 157600 2ia2A 265 1.695 3bpvA 138 1.748 2fa5A 162 1.785 3boqA 160 1.860 1zybA 232 1.951 a.4.5.4,b.82.3.2 125815,125816 3bddA 142 1.958 2h6bA 250 1.979 a.4.5.4,b.82.3.2 147228,147229 2ia0A 171 2.008 1xd7A 145 2.088 a.4.5.55 109566 3g3zA 145 2.144 1ylfA 149 2.219 a.4.5.55 123648 3kfwX 247 2.292 2ivmA 150 2.369 2cfxA 144 2.415 a.4.5.32,d.58.4.2 130395,130396 2cg4A 152 2.504 a.4.5.32,d.58.4.2 130417,130418 3jthA 98 2.549 1hkqA 132 2.602 a.4.5.10 83555 2rn7A 108 2.695 2nyxA 168 2.721 2frhA 127 2.722 a.4.5.28 133988 2cyyA 151 2.739 a.4.5.32,d.58.4.2 131028,131029 3bjaA 139 2.833 3jw4A 148 3.156 1ub9A 100 3.898 a.4.5.28 99159 2qwwA 154 4.004 3cjnA 162 4.090 1hw5A 210 4.183 a.4.5.4,b.82.3.2 16098,28137 1p4xA 250 4.879 a.4.5.28,a.4.5.28 87784,87785 3lwfA 159 4.893 2p5vA 162 5.366 2pn6A 150 5.675 3ez2A 398 5.773 1sd4A 126 5.991 a.4.5.39 105428 3fx3A 237 6.315 1okrA 123 6.429 a.4.5.39 93269 1biaA 321 6.437 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 3eqxA 373 6.530 3gflA 146 6.577 3gfjA 146 6.623 3gfmA 146 6.732 1z6rA 406 7.002 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2bgcA 238 7.604 a.4.5.4,b.82.3.3 128458,128459 3e6mA 161 7.642 1rztA 331 8.619 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 2fu4A 83 8.855 3echA 142 9.640 1lvaA 258 9.752 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1q1hA 110 9.885 a.4.5.41 95580 2fe3A 145 10.39 2dbbA 151 10.93 2qlzA 232 11.15 3h3zA 235 11.74 1jhgA 101 11.90 a.4.12.1 19009 2eq8C 40 12.23 1tbxA 99 12.88 a.4.5.48 106748 3b73A 111 13.10 1utxA 66 16.36 a.35.1.3 108034 1vin 268 16.92 1ri7A 171 17.48 a.4.5.32,d.58.4.2 97504,97505 1j5yA 187 17.96 a.4.5.1,d.94.2.1 71592,71593 3i4pA 162 19.02 1xmaA 145 20.09 a.4.5.61 115477 2iwbA 246 20.24 3cuqB 218 20.44 2jn6A 97 20.78 a.4.1.19 148144 3irrA 67 22.86 3h7rA 331 23.64 1g2hA 61 24.31 a.4.1.12 60224 1mzbA 136 24.35 a.4.5.42 91497 2p8tA 200 24.56 a.4.5.72,d.74.4.2 149315,149316 3k0lA 162 24.82 2bnmA 198 25.17 a.35.1.3,b.82.1.10 128835,128836 1y7yA 74 25.18 a.35.1.3 122729 3eyyA 145 25.20 3i71A 68 29.21 2ztgA 739 29.73 3ezfA 403 29.75 1f5qB 252 30.82 a.74.1.1,a.74.1.1 18362,18363 3go5A 285 31.08 1adrA 76 31.34 a.35.1.2 17042 2gqqA 163 31.34 2b5aA 77 31.50 a.35.1.3 127882 2w57A 150 32.99 3f3xA 144 33.02 3iwfA 107 33.18 3gwzA 369 34.23 3h7uA 335 36.48 1r69A 69 37.22 a.35.1.2 17028 2hoeA 380 39.30 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2croA 71 40.13 a.35.1.2 17038 1b0nA 111 40.98 a.34.1.1,a.35.1.3 17001,17064 2cro 71 41.27 2vliA 183 42.04 3f8bA 116 42.39 1r7jA 95 42.78 a.4.5.49 104836 2eq9C 41 43.19 2e7xA 150 46.20 3if0X 153 47.16 1y9qA 192 48.18 a.35.1.8,b.82.1.15 116592,116593 2hiyA 183 48.37 d.356.1.1 147288 2pijA 67 49.71 2obpA 96 49.74 a.4.5.71 148718 2r1jL 68 49.87 a.35.1.2 151525 1qbjA 81 50.75 a.4.5.19 16155 3bz6A 183 50.77 a.4.5.75,a.4.5.75 155739,155740 3majA 382 55.81 1w85I 49 58.42 a.9.1.1 114347 2hm7A 310 58.59 1ks9A 291 59.77 a.100.1.7,c.2.1.6 68857,68858 2j5pA 76 61.25 a.4.5.67 138050 1a0fA 201 63.71 a.45.1.1,c.47.1.5 17737,33031 3hhhA 116 64.29 2fjrA 189 64.51 2dqrA 122 65.85 2e1nA 138 66.80 3ieyB 153 67.16 1pp7U 131 68.02 a.4.5.44 94973 2o3fA 111 68.92 a.4.1.20 148573 1resA 43 70.08 a.4.1.2 16023 2jt1A 77 71.87 1aisB 200 74.25 a.74.1.2,a.74.1.2 18384,18385 3edyA 544 74.46 2f2cA 254 74.63 a.74.1.1,a.74.1.1 132805,132806 3ivpA 126 74.84 2dt5A 211 75.20 a.4.5.38,c.2.1.12 131708,131709 2eshA 118 75.56 a.4.5.61 132325 3kkzA 267 79.72 3cuqA 234 82.36 3hihA 223 83.63 1dpuA 99 83.75 a.4.5.16 16150 1fseA 74 85.28 a.4.6.2 60000 1wi9A 72 85.77 a.4.5.47 114663 2qenA 350 86.34 2w25A 150 87.64 3h5tA 366 87.75 1hlvA 131 89.34 a.4.1.7,a.4.1.7 65854,65855