# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 1.79e-12 3ic7A 126 2.68e-11 2ek5A 129 3.22e-11 2wv0A 243 8.61e-11 3edpA 236 7.75e-10 1hw1A 239 1.27e-09 a.4.5.6,a.78.1.1 16111,18441 3eetA 274 1.46e-09 3bwgA 239 3.71e-09 a.4.5.6,d.190.1.2 155693,155694 2hs5A 239 1.50e-07 a.4.5.6,a.78.1.1 147379,147380 3f8mA 248 2.87e-07 2di3A 239 4.55e-07 3c7jA 237 1.67e-06 3ihuA 222 1.71e-06 3fmsA 209 2.62e-06 1fx7A 230 0.000283 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 0.000338 2dtrA 226 0.000748 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.001752 1on2A 142 0.007145 a.4.5.24,a.76.1.1 87103,87104 2ev0A 142 0.1074 a.4.5.24,a.76.1.1 132413,132414 2hr3A 147 0.1214 a.4.5.28 136678 2h09A 155 0.1566 2cohA 202 0.2370 a.4.5.4,b.82.3.2 130677,130678 3ctaA 230 0.2507 a.4.5.28,b.43.5.2 156979,156980 1bia 321 0.2525 2oqgA 114 0.2914 1lj9A 144 0.3136 a.4.5.28 78035 3e6cC 250 0.4034 a.4.5.4,b.82.3.2 158038,158039 1z91A 147 0.4386 a.4.5.28 124736 1lnwA 147 0.4490 a.4.5.28 78104 2fmyA 220 0.4793 3e5xA 250 0.4794 3d0sA 227 0.5088 2zdbA 195 0.5089 2a61A 145 0.5319 a.4.5.28 126187 1sfxA 109 0.5377 a.4.5.50 105505 2pexA 153 0.5487 2h6cA 232 0.5527 a.4.5.4,b.82.3.2 147232,147233 2fbkA 181 0.5583 a.4.5.28 133247 1r1uA 106 0.5663 a.4.5.5 104771 2ethA 154 0.5694 a.4.5.28 132358 1smtA 122 0.5912 a.4.5.5 16109 3e97A 231 0.5948 1s3jA 155 0.5961 a.4.5.28 98437 1r1tA 122 0.6022 a.4.5.5 104769 2fbhA 146 0.6178 a.4.5.28 133245 3f6oA 118 0.6367 2fbiA 142 0.6680 a.4.5.28 133246 3dv8A 220 0.6728 2pjpA 121 0.7821 3f6vA 151 0.8658 3deuA 166 0.8697 a.4.5.28 157600 3bp8A 406 1.063 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2nnnA 140 1.091 2f2eA 146 1.105 a.4.5.69 132808 3gw2A 108 1.110 3hsrA 140 1.178 1u2wA 122 1.224 a.4.5.5 119487 1xd7A 145 1.237 a.4.5.55 109566 2zcwA 202 1.246 3fm5A 150 1.284 1jgsA 138 1.302 a.4.5.28 66683 1i6xA 209 1.321 a.4.5.4,b.82.3.2 83673,83674 3cdhA 155 1.384 3broA 141 1.474 a.4.5.28 155517 3cuoA 99 1.570 1wsuA 124 1.659 a.4.5.35,a.4.5.35 121245,121246 2b0lA 102 1.820 a.4.5.66 127641 2bv6A 142 1.843 a.4.5.28 146218 1yg2A 179 1.927 a.4.5.61 116681 3l09A 266 1.956 3jthA 98 2.012 2gxgA 146 2.056 3bpvA 138 2.094 1ulyA 192 2.194 a.4.5.58 113297 3g3zA 145 2.270 2v79A 135 2.279 2fa5A 162 2.374 2rdpA 150 2.374 3kfwX 247 2.413 3ecoA 139 2.418 2zkzA 99 2.422 3k69A 162 2.508 2cg4A 152 2.575 a.4.5.32,d.58.4.2 130417,130418 2o0yA 260 2.577 2nyxA 168 2.650 3bj6A 152 2.663 1zybA 232 2.718 a.4.5.4,b.82.3.2 125815,125816 3boqA 160 2.788 3eqxA 373 2.808 1ri7A 171 2.903 a.4.5.32,d.58.4.2 97504,97505 2ia0A 171 2.960 2g7uA 257 3.034 2qz8A 149 3.115 2cfxA 144 3.181 a.4.5.32,d.58.4.2 130395,130396 2ivmA 150 3.206 1mkmA 249 3.399 a.4.5.33,d.110.2.2 79242,79243 2gauA 232 3.545 a.4.5.4,b.82.3.2 134894,134895 2frhA 127 3.585 a.4.5.28 133988 2rn7A 108 3.692 2cyyA 151 3.779 a.4.5.32,d.58.4.2 131028,131029 3jw4A 148 3.791 3ez2A 398 3.804 2ia2A 265 3.852 1ub9A 100 4.205 a.4.5.28 99159 1biaA 321 4.230 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 3e6mA 161 4.259 3bjaA 139 4.341 3cjnA 162 4.584 1hkqA 132 4.596 a.4.5.10 83555 3bddA 142 5.076 1hw5A 210 5.517 a.4.5.4,b.82.3.2 16098,28137 2h6bA 250 5.577 a.4.5.4,b.82.3.2 147228,147229 2d1hA 109 5.617 a.4.5.50 131125 1ylfA 149 5.940 a.4.5.55 123648 1p4xA 250 6.610 a.4.5.28,a.4.5.28 87784,87785 3lwfA 159 6.899 3fx3A 237 7.369 1sd4A 126 7.455 a.4.5.39 105428 2p5vA 162 7.758 2pn6A 150 7.966 2gqqA 163 8.701 1rztA 331 9.039 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 2qwwA 154 9.565 3echA 142 9.724 1q1hA 110 10.10 a.4.5.41 95580 1vin 268 10.36 1z6rA 406 11.30 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1okrA 123 12.56 a.4.5.39 93269 2bgcA 238 12.59 a.4.5.4,b.82.3.3 128458,128459 3h3zA 235 12.64 1jhgA 101 13.18 a.4.12.1 19009 3gflA 146 13.35 3gfmA 146 13.41 1lvaA 258 13.48 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 3gfjA 146 14.08 2fu4A 83 14.36 3k0lA 162 14.79 3b73A 111 15.06 1xmaA 145 15.92 a.4.5.61 115477 2fe3A 145 17.18 1tbxA 99 17.35 a.4.5.48 106748 2dbbA 151 19.26 2hoeA 380 19.39 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2qlzA 232 19.73 1j5yA 187 19.91 a.4.5.1,d.94.2.1 71592,71593 2ztgA 739 20.46 3go5A 285 25.62 3h7rA 331 26.07 3i71A 68 28.61 1utxA 66 29.09 a.35.1.3 108034 3irrA 67 29.81 2p8tA 200 29.92 a.4.5.72,d.74.4.2 149315,149316 3i4pA 162 30.65 3eyyA 145 30.86 2qenA 350 31.03 1mzbA 136 31.38 a.4.5.42 91497 3ezfA 403 32.11 3majA 382 32.96 3hhhA 116 33.51 2b5aA 77 33.53 a.35.1.3 127882 1g2hA 61 33.58 a.4.1.12 60224 2w57A 150 35.67 1adrA 76 36.31 a.35.1.2 17042 2bnmA 198 36.90 a.35.1.3,b.82.1.10 128835,128836 3f3xA 144 37.18 1y7yA 74 39.12 a.35.1.3 122729 2eq8C 40 39.67 3h7uA 335 41.07 3bz6A 183 41.66 a.4.5.75,a.4.5.75 155739,155740 3f8bA 116 42.52 2jn6A 97 43.25 a.4.1.19 148144 1y9qA 192 48.26 a.35.1.8,b.82.1.15 116592,116593 2iwbA 246 48.56 1resA 43 48.67 a.4.1.2 16023 2cro 71 49.34 3ez7A 398 49.64 1b0nA 111 50.38 a.34.1.1,a.35.1.3 17001,17064 3cuqB 218 50.81 2croA 71 51.11 a.35.1.2 17038 3ln3A 324 51.20 2e7xA 150 51.22 2fjrA 189 52.23 2bduA 297 53.26 c.108.1.21 146135 3iwfA 107 56.75 3kkzA 267 57.91 2cchB 260 58.84 a.74.1.1,a.74.1.1 130237,130238 1pp7U 131 61.21 a.4.5.44 94973 2zhgA 154 64.83 2f2cA 254 64.83 a.74.1.1,a.74.1.1 132805,132806 2jmlA 81 65.16 3gwzA 369 65.61 2hm7A 310 69.03 2pijA 67 69.15 2obpA 96 69.19 a.4.5.71 148718 2g9wA 138 70.43 a.4.5.39 147097 1wi9A 72 70.45 a.4.5.47 114663 2dt5A 211 72.13 a.4.5.38,c.2.1.12 131708,131709 1f5qB 252 72.51 a.74.1.1,a.74.1.1 18362,18363 3ivpA 126 73.56 1rzsA 61 73.79 a.35.1.2 105139 2eljA 88 75.50 1r69A 69 76.01 a.35.1.2 17028 1fh9A 312 77.25 c.1.8.3 28913 3hihA 223 77.45 2eshA 118 78.51 a.4.5.61 132325 1dpuA 99 79.55 a.4.5.16 16150 2eq9C 41 80.84 2hiyA 183 84.37 d.356.1.1 147288 1qbjA 81 85.38 a.4.5.19 16155 1gtvA 214 85.82 c.37.1.1 70537 2e1nA 138 86.52 3elkA 117 86.66 1r7jA 95 87.75 a.4.5.49 104836 2cujA 108 89.31 a.4.1.18 130812 2j5pA 76 89.88 a.4.5.67 138050